KAIKObase gene description page [BMgn000220/Gene12396]
Outline
| Official gene ID | BMgn000220 |
|---|---|
| Local gene ID | Gene12396 |
| Chromosome | chr22 |
| Start (Chr.) | 4863808 |
| End (Chr.) | 4881895 |
| Scaffold | Bm_scaf18 |
| Start (Scaf.) | 5613649 |
| End (Scaf.) | 5631736 |
| Direction | - |
Member sequences
| ID | Type | Representative |
|---|---|---|
| BGIBMGA000220 | predicted gene | Yes |
Representative sequence
Nucleotide
ATGTACACGTATCTCAAATTTGGGCTACCACGAGTGTTTCCGCCGAATCACAACGGCTCGCAAAGATCTGGCACACCAAAGCCGAAAACTTCGATAGGCAGCGGCATGAAACCGGTACAAAGAATACACCGACAGAGCAGAGGAGTTCGGGAAACGTCTTCAGGTTATGACAGCTCCGACAACGAAACCACAGCTAACTACAACAAATACAGCCGGAAGTATCGATCGGATCCTGACTTTCGGATGCAAAACCTTCAGTCTACTTATCAGGCGAGTACTGGCGTGCCACTGGTAGCAATGCACCAGGCGGGTATCCGGGAGCCGCAGTGGGCCAACTCCCGGCACAAGTCTGTCAGCGAAGCCAACTTACTGGGCATAGACGGACGACCGCAACGGACCCAATACACAAACAGAAGAAACAGTGTTGCCGATTTCGTTCCGGACGGAGATCATCACAGTTATCTGCTGCCGTCTTCGCACCTCGGTGGAAGGATGTCGAAGGCCGGTAGTCACATGTCGGTAGCGCACTCCAGGAAGCACTCTACACTGAGGCCCGGAGATCAACTCGACGGATATGCACATTCAGCTTACATTTACCCGAATTATTACGTGAACAGTTTAGAAATAACGTCACCGGAAAACAAATCAACGCTCGTGGTGTCAGGGTTGAGTTTCGAAGTGAAGTGTGGCGAGATTCTCGCAGTGCTGGCGACCGCTCAGCATGAGGCGACGGGACTATTGGACGTTCTAGCTGGAGTTCGGAAGAAACTATCCGGCGATATAGTGATCAATGGGCAGCCTGTAGCTTCGTCTACGCTTAGGAAAGTGGTAGCATACGTGAGGAATGACACCGCGCTGTGCCCCACCATGTCAGTGGAGCACACGTTGAGGTTTCATGCCGCATTGAGAAAGCCCAGGAACACGCATAGTCACGTTAAAATGGGTGACCGTGATCGGATAAATCTTCTGATAGAAGAGCTTGGTTTAGAACAAGTCAGGGACACGAACGTTGGGCGATTGACTCGCTCGGAGATCCGTAGACTGAATGTTGCGTGTCAACTACTTTTGGACATGGCTATCCTTATCTTAGACCAGCCTACGAAAGAGATGGACATATTTGACACGTTCTTCTTGGTGGAGTATCTTCGGAACTGGGCCAGCACCGGTCGTGTCGTGATCATGTCGTTACATCCACCTACGTATGAGATTTTTGCCATGTTGACTAAAGTTGTATTAATATCAGCAGGTCGAACAATGTTCAGCGGTTACAGACGGGATATGTTGCCATATTTCTCATCCATCGATTATCCCTGCCCTGCCTTCAAGAACCCATCGGACTATTATTTGGACCTGGTGACCCTGGATGAGTTGTCAGCGGCGGCGCTACTCGAGTCCTCGGGCCGCATCGAGGCGCTGAGCGCTGCCCGGCCCGCCACTCGCGCCGCCCCGCCCCCCGCCGCGCCCCTCCCGGCGCCCCGACACCCGCCCGCGCCGCACGTGCAGATACTCGCACTACTGCAAAAAACTTTAGTATTCACTCAAGTTTCGACATTATCGAATATCATCACGCGAGTCCTCATAGCTGCTATTATATCTATTATCACCGGAACCATCTTCTGGGACCTGCCATCCACCGACCCTAAGTTAACACAGAACGACAGAATAGGATTTCACTACACGGTGATGTGTTTGTCTGCTTGGCCGGTGTTGCTGTGGCTCGGCGCCAGGGAGGCCAGTTCGATGAGGAAGCACGTCGAGAGAGATATCGCTGTAGGACTTTACTCCAGGACCGTGTTTATATTATACGATCAATTTATCGAAGTACTTTCAGCGATATTGACCTGGCTAGCATACTTGGTCCCAAGCTATGCCATGTCGGGACTGTATGCACCCACACCAGGTGCCTTCGACGCCTTCTATATCTATTTAGGATGCATGGTGTTATTTTTCATCAACATCCAAATGGTGTGTCGAGCAACGATATTCCTGGTTCCGATGGAGAAGACGGCCTCAGTGATAGCTGGCGTATGTCTCCTGCTCGGCACCTTGGTGAACGGCGTGATGATACAGCAAGCGGATCTGCCTTATTACGTTAAATGGCTGCAATACGTGTCTCCGTCGAGGTGGACGATACCGGAGATATTGAGGAGGGAACTAAGCGAAACGGTTTTGAGGAACAGCATCAGTAAAGATCTCAGATGTACCAATAAACAGAGGCCGTATCCCGATATAATAGTACAATCGCCGTGTCCGCCGCCGAATGGAACTCAGGTGCTCTCCAACTACGGGTACCTTCGCGCGGACAACCTCTGGGAGCAAACGGACGACAGATTCCTGATCGCGCTGACCGTATTCTACGCGGTGTTCTCGCTGATTGCGATAATCGCTTTTGTCGCCGACTGCCCCAGTTATAGGAGAAGCAAAGAACGGAACAGTATGAAAGGACACAAGGTAACAGTTAACACTCCATGA
ORF
Protein
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF01061.19 | ABC-2 type transporter | |
| Pfam/Hmmer3 | PF00005.22 | ABC transporter | |
| BLASTP/NCBI-nr | EHJ75228 | hypothetical protein KGM_20380 [Danaus plexippus] | 0.0 |
| InterPro | IPR003439 | ABC_transporter-like | |
| InterPro | IPR013525 | ABC_2_trans | |
| Gene Ontology(CC) | GO:0016020 | membrane | |
| Gene Ontology(MF) | GO:0005524 | ATP binding | |
| Gene Ontology(MF) | GO:0016887 | ATPase activity |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS210111 | DPSCF300017 | 1278571 | 1285766 | + |
| H. melpomene | HMEL005061 | HE669877 | 24822 | 33561 | + |
| M. sexta | Msex014927-RB | scaffold00795 | 37095 | 69111 | - |
| M. sexta | Msex014927-RC | scaffold00795 | 42976 | 68983 | - |
| M. sexta | Msex015018-RA | scaffold00804 | 36460 | 46249 | - |
| P. xylostella | Px016406.1 | scaffold_8 | 151167 | 158192 | - |