KAIKObase gene description page [BMgn000472/Gene12395]
Outline
| Official gene ID | BMgn000472 |
|---|---|
| Local gene ID | Gene12395 |
| Chromosome | chr22 |
| Start (Chr.) | 4803140 |
| End (Chr.) | 4813561 |
| Scaffold | Bm_scaf18 |
| Start (Scaf.) | 5681983 |
| End (Scaf.) | 5692404 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| AK380985 | full-length cDNA | Yes |
| BGIBMGA000472 | predicted gene | No |
Representative sequence
Nucleotide
CGGCCGGCCGATGAGTTCGAAATATATTTAGTAACGTGAAAGTCGTGTCGCATCGTTATGTTTTAATCATTGTTTTTGCCACGGATTCTTGTTTTATTTATTAAAAATTTCTGTTTTAAATTTTTTGTATGAAAAATGATCGGTGGCGATTATACTTTGGAGCTGTGCAACGTTTTCCATTCGGGACAGGTGGAACCAGGCAGCTTCTTCCAACGTCTCACTGGAGGCGTGAAGACAGGAGTGATCCTTAAAGATGTATCCTTCACGACACACAGCGGCGAAGTCACGGCCATACTGGGATCTAAAGGTAGCGGTAAACGCGCCCTCCTAGACGTGATAGCTCGTCGCGTGCCGTCAAAAGGCCACGTGCTACTCGAAGGCGTACCCTTAGAAGAGGAACAGTTCAACATCAACTGCGCTTTGGTTCGACACTCGACAAGACTGCTGCCAGGACTGAGCGTTCAGCAGACATTGGCCTTATCACTTACTAAGATTTCAGGGTATTTGAAGTCATCGAAAGTGAAACAAGTGATGGCTGACATGGCTCTCTCGCAGGTTGCGAACAAATGCGTCACAAATTTAACCAAAAGCGAATACAGAAGACTAGTTATTGGAGTGCAATTGATTCGTGATCCCATTATATTATTACTGGATGAGCCGACATGGGATTTGGATCCTCTCAACACATATCTTGTTATCTCAATATTATCGAATGCCGCTAAAAAATACGGGACCGCTATCATACTCACAATGGAAAAGCCTAGATCAGATGTATTCCCATTCCTGGACCGGGTGGTGTATCTATGCCTCGGGGATGTAGTATACGCGGGACCAACGAGGAACTTGCTTGACTACTTCGGCAGCATCGGGTTCCCGTGTCCACAGTTAGAAAACCCGCTCATGTACTACCTGTGCCTCTCCACCGTTGATAGGAGATCACGGGAGCGCTTCATTGAATCAAACCACCAGATCGCGGCGCTGGTCGAGAAATTTAAGATCGAAGGGCAAGCCATCATGCAGGGGAACCTTCATGAAAACAATCGTATCGTAAACCCTAATAAAGTACAAATGAACTATGGGAAGCCTGGCGGATTTAAGACAGTGTGGATGTTGTACTTACGGACTCTAGCTACAATATTCAATCTTAACAAACACGGATTCAAGCAAATGTTTATGAGACTTCTTTGTTTACCGATATATTTTTTCATACTTTGGATTTTCTACAACGAGGCAAAGGATTATCAACGGGCTTTCATTACTAAAAGCGGTTTAATCTTCAACGCAATGGTCGGAACTTATTTTGTCAGCATTATGAACACGATTTGTCTTTACGGTCCTTACAGAACTCGGTACTATGAAGAGTCCCAGGAGGGACATTACAGCGGCGCCAGTTTACTTCTGTCTTGGAATATAGTTTCGTTGCCATTTTCATGTATCACTTCGTTCGCTTCGGCTGCAATTATTTACCCGATCTTGGCCGACATTTCGGAATCGTTGGACTACATTCACTTCTCGTTGGTGCTGTGGTCGTCGTATATTTACGCGGAACAACAAGCGATCGCGATCATGGTATTCGTTAAGAACGGACTGAACGCCGCCATTGTCAACTTGTACATCACTTGCATTTACGTCATGCTCGCCAGTGGAGTGTTAAGATCCTACAAAGGCTTCGAAGACTGGCTCCACTACTTAACTTACATAACGCACACACGTTACGCCTCGATCTTCCTCCACCGGACCGTCTTCAAGCAACCGACCTTCAACATTCTGCCCTACAGCGACCACGAGAATTGCACGGGCATCACCAGCCTCATTCAGACCTCGTCGAGTTTAAACACGAATTCCAACGCTAACTGCAGATACGCCAGCGGGAAGGCATTCTTGACTGAACGATTCACGTCGAAAACTTTCACGGGGGACATTAACTTAGCGGGAGACTTCAATTTAAATTTCAATCTCGGCGTGTCGTTTGCATTCTCCGTCGGTATTATGATTTTCAACAAATTCCTGTATCTGATGCCTCTGCCTAGCTACATAACCGATAAATTCAGAGAATAAAACATATTTTTTTTTCAAATAATTATATAGATTTTAATTTTGTGTACGTACAATATACTATTTAAAAAATATATTTTTTAAAAACTGTAAAAAATAATGCATCAGAAA
ORF
ATGATCGGTGGCGATTATACTTTGGAGCTGTGCAACGTTTTCCATTCGGGACAGGTGGAACCAGGCAGCTTCTTCCAACGTCTCACTGGAGGCGTGAAGACAGGAGTGATCCTTAAAGATGTATCCTTCACGACACACAGCGGCGAAGTCACGGCCATACTGGGATCTAAAGGTAGCGGTAAACGCGCCCTCCTAGACGTGATAGCTCGTCGCGTGCCGTCAAAAGGCCACGTGCTACTCGAAGGCGTACCCTTAGAAGAGGAACAGTTCAACATCAACTGCGCTTTGGTTCGACACTCGACAAGACTGCTGCCAGGACTGAGCGTTCAGCAGACATTGGCCTTATCACTTACTAAGATTTCAGGGTATTTGAAGTCATCGAAAGTGAAACAAGTGATGGCTGACATGGCTCTCTCGCAGGTTGCGAACAAATGCGTCACAAATTTAACCAAAAGCGAATACAGAAGACTAGTTATTGGAGTGCAATTGATTCGTGATCCCATTATATTATTACTGGATGAGCCGACATGGGATTTGGATCCTCTCAACACATATCTTGTTATCTCAATATTATCGAATGCCGCTAAAAAATACGGGACCGCTATCATACTCACAATGGAAAAGCCTAGATCAGATGTATTCCCATTCCTGGACCGGGTGGTGTATCTATGCCTCGGGGATGTAGTATACGCGGGACCAACGAGGAACTTGCTTGACTACTTCGGCAGCATCGGGTTCCCGTGTCCACAGTTAGAAAACCCGCTCATGTACTACCTGTGCCTCTCCACCGTTGATAGGAGATCACGGGAGCGCTTCATTGAATCAAACCACCAGATCGCGGCGCTGGTCGAGAAATTTAAGATCGAAGGGCAAGCCATCATGCAGGGGAACCTTCATGAAAACAATCGTATCGTAAACCCTAATAAAGTACAAATGAACTATGGGAAGCCTGGCGGATTTAAGACAGTGTGGATGTTGTACTTACGGACTCTAGCTACAATATTCAATCTTAACAAACACGGATTCAAGCAAATGTTTATGAGACTTCTTTGTTTACCGATATATTTTTTCATACTTTGGATTTTCTACAACGAGGCAAAGGATTATCAACGGGCTTTCATTACTAAAAGCGGTTTAATCTTCAACGCAATGGTCGGAACTTATTTTGTCAGCATTATGAACACGATTTGTCTTTACGGTCCTTACAGAACTCGGTACTATGAAGAGTCCCAGGAGGGACATTACAGCGGCGCCAGTTTACTTCTGTCTTGGAATATAGTTTCGTTGCCATTTTCATGTATCACTTCGTTCGCTTCGGCTGCAATTATTTACCCGATCTTGGCCGACATTTCGGAATCGTTGGACTACATTCACTTCTCGTTGGTGCTGTGGTCGTCGTATATTTACGCGGAACAACAAGCGATCGCGATCATGGTATTCGTTAAGAACGGACTGAACGCCGCCATTGTCAACTTGTACATCACTTGCATTTACGTCATGCTCGCCAGTGGAGTGTTAAGATCCTACAAAGGCTTCGAAGACTGGCTCCACTACTTAACTTACATAACGCACACACGTTACGCCTCGATCTTCCTCCACCGGACCGTCTTCAAGCAACCGACCTTCAACATTCTGCCCTACAGCGACCACGAGAATTGCACGGGCATCACCAGCCTCATTCAGACCTCGTCGAGTTTAAACACGAATTCCAACGCTAACTGCAGATACGCCAGCGGGAAGGCATTCTTGACTGAACGATTCACGTCGAAAACTTTCACGGGGGACATTAACTTAGCGGGAGACTTCAATTTAAATTTCAATCTCGGCGTGTCGTTTGCATTCTCCGTCGGTATTATGATTTTCAACAAATTCCTGTATCTGATGCCTCTGCCTAGCTACATAACCGATAAATTCAGAGAATAA
Protein
MIGGDYTLELCNVFHSGQVEPGSFFQRLTGGVKTGVILKDVSFTTHSGEVTAILGSKGSGKRALLDVIARRVPSKGHVLLEGVPLEEEQFNINCALVRHSTRLLPGLSVQQTLALSLTKISGYLKSSKVKQVMADMALSQVANKCVTNLTKSEYRRLVIGVQLIRDPIILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIILTMEKPRSDVFPFLDRVVYLCLGDVVYAGPTRNLLDYFGSIGFPCPQLENPLMYYLCLSTVDRRSRERFIESNHQIAALVEKFKIEGQAIMQGNLHENNRIVNPNKVQMNYGKPGGFKTVWMLYLRTLATIFNLNKHGFKQMFMRLLCLPIYFFILWIFYNEAKDYQRAFITKSGLIFNAMVGTYFVSIMNTICLYGPYRTRYYEESQEGHYSGASLLLSWNIVSLPFSCITSFASAAIIYPILADISESLDYIHFSLVLWSSYIYAEQQAIAIMVFVKNGLNAAIVNLYITCIYVMLASGVLRSYKGFEDWLHYLTYITHTRYASIFLHRTVFKQPTFNILPYSDHENCTGITSLIQTSSSLNTNSNANCRYASGKAFLTERFTSKTFTGDINLAGDFNLNFNLGVSFAFSVGIMIFNKFLYLMPLPSYITDKFRE*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF01061.19 | ABC-2 type transporter | |
| Pfam/Hmmer3 | PF13555.1 | P-loop containing region of AAA domain | |
| Pfam/Hmmer3 | PF13191.1 | AAA ATPase domain | |
| Pfam/Hmmer3 | PF00005.22 | ABC transporter | |
| BLASTP/NCBI-nr | EHJ75229 | hypothetical protein KGM_20384 [Danaus plexippus] | 0.0 |
| InterPro | IPR003439 | ABC_transporter-like | |
| Gene Ontology(MF) | GO:0005524 | ATP binding | |
| Gene Ontology(MF) | GO:0016887 | ATPase activity |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS210042 | DPSCF300017 | 1253946 | 1260104 | - |
| H. melpomene | HMEL005909 | HE670320 | 60974 | 68018 | - |
| M. sexta | Msex012319-RA | scaffold00421 | 1 | 4375 | + |
| P. xylostella | Px016407.1 | scaffold_8 | 190187 | 201753 | + |