KAIKObase gene description page [BMgn000640/Gene00250]
Outline
| Official gene ID | BMgn000640 |
|---|---|
| Local gene ID | Gene00250 |
| Chromosome | chr1 |
| Start (Chr.) | 7882951 |
| End (Chr.) | 7905079 |
| Scaffold | Bm_scaf8 |
| Start (Scaf.) | 2284997 |
| End (Scaf.) | 2307125 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| AK386916 | full-length cDNA | Yes |
| NM_001112749.1 | publicly available mRNA | No |
| BGIBMGA000640 | predicted gene | No |
Representative sequence
Nucleotide
GCACGAGGTCTGTTTTAATACATCAAAAGCAAAAAATACGAGAATATTGAGTAGTGAATGTTATAAAGTTATTTGGAAACTGAAAGCTGTTCAAATCAATTGAAGTCTGGCTTATCATTTCTTAGCCTTGGAGGGCGCTGTTCAAAACGATTGTTCATCTACATTTCTGAAGACACAACAATTGACGATTGCTTTTCGCAATGCTGCCAGTGCTTGTTTGCATAATAGTTATCGTATTAATCTGTTGTAATATCATCAGAAGTGTAATCAAACCCGAGAAATTTCCTCCAGGTCCGATATGGTACCCATTTTTTGGCAGCAGCTCAATTGTTCAACAAATGACAAGCAAACACGGGTCGCAGTGGAAAGCGTTACTGGAACTTTCGAAACAGTGGTCCACTCAGGTTCTCGGTTTAAAACTAGGAAGAGAATTAGTGGTCGTCGTCTACGGGGAGAAGAATGTTCGTCAAGTGTTCTCGGAATCCGAGTTCGACGGTCGACCGAACTCTTTCTTCTATAAGTTGAGATGTCTCGGAAAACGACTCGGCGTCACCTTTGTTGATGGTCCTCTTTGGCGAGAACACAGACAGTTCACTGTAAAACATTTAAAGAATGTTGGTTTTGGTAAGACATCGATGGAGCTGGAAATCCAAAACGAATTGAAGTTGTTACGTGAATACATAAATGATAATAAACATAAGCCGATAAAAGTTGATAGTATGTTCTCATCGGCCGTAATGAATGTTTTATGGAAGTATGTAGCAGGCGAGAGAATCAGAGAAGACAAATTAGAACGTTTACTTGAACTATTCTATTTGAGATCGAAGGCGTTCACTTTGACTGGTGGCTTGCTAAGCCAAATACCTTGGTGCAGGTTCATTATACCCGGCCTAAGTGGGTACAAACTAATAGTTGACTTGAACCAGCAGATATCTGAAATTATTGAGGAAGCCATAAAAAAGCATTTAAACAAAGAAGTGCAACAGAACGATTTTATATATTCGTTCTTAGATGAAATGAACGAAGAGAACAAAGCATCATTTACGTACGATCAGCTGAAAACCGTGTGCCTTGATCTAATAATAGCCGGATCCCAAACAACAGGGAACGCTGTTAAGTTTGCTCTTCTATCAGTTTTGCGAAACAAAAACATTCAAGAAAAAATCTTCAATGAAATAGAAAACACCATTGGCGATTCTATGCCTTGCTGGGCTGACAGTAGCAAACTCGTATATACATCGGCATTTCTGCTGGAAGTAATGAGAATTCACACAATAGCGCCCCTGGCTGGTCCTCGAAGAGTTTTACAGGACACAGTCATCGACGGCTACGTTATACCTAAAGAGACGACGGTTCTGATATCCTTGGCCGATATTCACTTGGATCCGAATCTGTGGCCAGATCCTCACGAAATAAAGCCGGAGAGGTTTATCGACGAAAAAGGATTATCGAAAAGTAATGAACACATCTATCCTTTCGGATCAGGTCGGAGACGGTGCCCAGGCGATTCGCTGGCCAGGTCTTTCGTCTTTATCATATTTGTTGGGATCCTGCAGAAGTACAGAATAGACTGTGTCAATGGAGTATTGCCGTCTAACGAAGCTGACATAGGCTTGCTTGCGGCTCCAAAACCTTTTGTCGCTAATTTCGTATCAAGAGAGTAAATCGCCCAAAAATCTATTTTATGATTGTGACCTGGTGGTCATTAGGTTAATGTCTGTGTTTGGTTTTAAACTACTGTTTTTGTATGTAGTTTGTAGTTTCAAAAGTGTAACTAGTAAGCATTTATTATATTATAGTTATTAAATTAAGTTCCTTTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
ORF
ATGCTGCCAGTGCTTGTTTGCATAATAGTTATCGTATTAATCTGTTGTAATATCATCAGAAGTGTAATCAAACCCGAGAAATTTCCTCCAGGTCCGATATGGTACCCATTTTTTGGCAGCAGCTCAATTGTTCAACAAATGACAAGCAAACACGGGTCGCAGTGGAAAGCGTTACTGGAACTTTCGAAACAGTGGTCCACTCAGGTTCTCGGTTTAAAACTAGGAAGAGAATTAGTGGTCGTCGTCTACGGGGAGAAGAATGTTCGTCAAGTGTTCTCGGAATCCGAGTTCGACGGTCGACCGAACTCTTTCTTCTATAAGTTGAGATGTCTCGGAAAACGACTCGGCGTCACCTTTGTTGATGGTCCTCTTTGGCGAGAACACAGACAGTTCACTGTAAAACATTTAAAGAATGTTGGTTTTGGTAAGACATCGATGGAGCTGGAAATCCAAAACGAATTGAAGTTGTTACGTGAATACATAAATGATAATAAACATAAGCCGATAAAAGTTGATAGTATGTTCTCATCGGCCGTAATGAATGTTTTATGGAAGTATGTAGCAGGCGAGAGAATCAGAGAAGACAAATTAGAACGTTTACTTGAACTATTCTATTTGAGATCGAAGGCGTTCACTTTGACTGGTGGCTTGCTAAGCCAAATACCTTGGTGCAGGTTCATTATACCCGGCCTAAGTGGGTACAAACTAATAGTTGACTTGAACCAGCAGATATCTGAAATTATTGAGGAAGCCATAAAAAAGCATTTAAACAAAGAAGTGCAACAGAACGATTTTATATATTCGTTCTTAGATGAAATGAACGAAGAGAACAAAGCATCATTTACGTACGATCAGCTGAAAACCGTGTGCCTTGATCTAATAATAGCCGGATCCCAAACAACAGGGAACGCTGTTAAGTTTGCTCTTCTATCAGTTTTGCGAAACAAAAACATTCAAGAAAAAATCTTCAATGAAATAGAAAACACCATTGGCGATTCTATGCCTTGCTGGGCTGACAGTAGCAAACTCGTATATACATCGGCATTTCTGCTGGAAGTAATGAGAATTCACACAATAGCGCCCCTGGCTGGTCCTCGAAGAGTTTTACAGGACACAGTCATCGACGGCTACGTTATACCTAAAGAGACGACGGTTCTGATATCCTTGGCCGATATTCACTTGGATCCGAATCTGTGGCCAGATCCTCACGAAATAAAGCCGGAGAGGTTTATCGACGAAAAAGGATTATCGAAAAGTAATGAACACATCTATCCTTTCGGATCAGGTCGGAGACGGTGCCCAGGCGATTCGCTGGCCAGGTCTTTCGTCTTTATCATATTTGTTGGGATCCTGCAGAAGTACAGAATAGACTGTGTCAATGGAGTATTGCCGTCTAACGAAGCTGACATAGGCTTGCTTGCGGCTCCAAAACCTTTTGTCGCTAATTTCGTATCAAGAGAGTAA
Protein
MLPVLVCIIVIVLICCNIIRSVIKPEKFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEKNVRQVFSESEFDGRPNSFFYKLRCLGKRLGVTFVDGPLWREHRQFTVKHLKNVGFGKTSMELEIQNELKLLREYINDNKHKPIKVDSMFSSAVMNVLWKYVAGERIREDKLERLLELFYLRSKAFTLTGGLLSQIPWCRFIIPGLSGYKLIVDLNQQISEIIEEAIKKHLNKEVQQNDFIYSFLDEMNEENKASFTYDQLKTVCLDLIIAGSQTTGNAVKFALLSVLRNKNIQEKIFNEIENTIGDSMPCWADSSKLVYTSAFLLEVMRIHTIAPLAGPRRVLQDTVIDGYVIPKETTVLISLADIHLDPNLWPDPHEIKPERFIDEKGLSKSNEHIYPFGSGRRRCPGDSLARSFVFIIFVGILQKYRIDCVNGVLPSNEADIGLLAAPKPFVANFVSRE*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF12422.3 | Condensin II non structural maintenance of chromosomes subunit | |
| Pfam/Hmmer3 | PF00067.17 | Cytochrome P450 | |
| BLASTP/NCBI-nr | NP_001106220 | cytochrome P450 Cyp305B1 precursor [Bombyx mori] dbj|BAA96811.1| cytochrome P450 [Bombyx mori] gb|ABC69163.1| cytochrome P450 CYP305B1V1 [Bombyx mandarina] gb|ABD78849.1| cytochrome P450 Cyp305B1 [Bombyx mori] | 0.0 |
| InterPro | IPR001128 | Cyt_P450 | |
| InterPro | IPR017972 | Cyt_P450_CS | |
| InterPro | IPR002401 | Cyt_P450_E_grp-I | |
| Gene Ontology(MF) | GO:0009055 | electron carrier activity | |
| Gene Ontology(MF) | GO:0020037 | heme binding | |
| Gene Ontology(MF) | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | |
| Gene Ontology(MF) | GO:0005506 | iron ion binding | |
| Gene Ontology(BP) | GO:0055114 | oxidation-reduction process |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS207181 | DPSCF300001 | 5072588 | 5089318 | + |
| D. plexippus | DPOGS207180 | DPSCF300001 | 5052951 | 5067542 | + |
| H. melpomene | HMEL010376 | HE671062 | 12208 | 24960 | + |
| H. melpomene | HMEL010377 | HE671062 | 35227 | 51919 | + |
| M. sexta | Msex008564-RA | scaffold00181 | 238534 | 266799 | - |
| P. xylostella | Px002515.1 | scaffold_14 | 52466 | 56212 | - |