KAIKObase gene description page [BMgn001571/Gene12152]
Outline
| Official gene ID | BMgn001571 |
|---|---|
| Local gene ID | Gene12152 |
| Chromosome | chr21 |
| Start (Chr.) | 12167553 |
| End (Chr.) | 12173164 |
| Scaffold | Bm_scaf7 |
| Start (Scaf.) | 5950362 |
| End (Scaf.) | 5955973 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| NM_001114993.1 | publicly available mRNA | No |
| AK385884 | full-length cDNA | Yes |
| BGIBMGA001571 | predicted gene | No |
Representative sequence
Nucleotide
GAGTTTGAAGAAGCAAGCGGTCAAGGAATTCTAATTTAGAAAATAATACACGTAGGCTAATAAAACAGGATAAACACAAAATTTGAAATATAAATTGATAAAATGACTCCGATATTATACAAGACTGACGCCAGTCCGCCTGCTAGGGCTGTGATGATGATTGTTGATATATTGGGACTAAAAGTTGACGAGCAGGAACTGAATCCAATATTACGCCAACAAGACACACCGGAATTTAAAAAAAAAAATCCAATGAGAACTATTCCTATATTAGAGGAAGGAGATTTCTACCTCGCGGATAGTCACGCCATTATGTTGTACTTGATCGATAAATACGGTAAACCGGAACACGCTCATCTCTATCCGAGCGAGAAAAGGAAACGAGCTACAATAAATCAACGACTTTTCTTTGACTGCGGAGTGCTATTCCCTAGATTGAGGGCCGTTATGGCACCAACGTACGCAGGAAAATTAGCGGAATTGAATCGAAACATGATCAAGAACATCGAGGATGCTTATTCAATAATGGAATCCTATCTAACAGAGAATTTGTATCTAGCTGATGAAGTTGTCACTGTAGCGGACATAAGCGCAATAACGACTATTTCGTCTTTGAACGGCTTGTACCCGGTAGATGAGAAAAGATATCCAAAACTTAGCAAATGGATAAACAGAATGAACGATAAAGAATATTGTAGAAAGATCAACACTCCCGGAAGCGAGCTACATGTGGCCGGTTTGATAGCCTTAATGGACAATACTAAACACAATCAGCAATCAAAACTTTAGGTAAAGTCTTTTACTTTACTATTTAAAACTACTTTAAGCTTTGGCTATTTTATTATTTTTAAGAAAATTAAATTTTCACGTTTTCCTTTAGAATCACGTTTTTTTTATTGCTTATAAGTCACGGCCCTGCCACCTGGTATTCATTGATTACCGAAGCCCATAAACATCAACAACGTAAATGCCGAAACCAACCTTGAGAGAAGAGTTTCAAGTCTGTTTTTCCAGTACAATAGCTGCCCCTCCCTTAAAAACCGAAACGCATTACTGCTTCACGGCAGAAACAAGCAGAGTGGTAGTACCTACTCGAGCGGGCTCACACGACGGCTTACCACCAAATAAACCGTCGTGGCCTAAAGGATAAGACGTCCGGTGCATTCGTATCGAGCGATGCACCGGTGTTCAAATCCCGCAGGCAGGTACCAATTTTTCTAATGAAATACGTACTTAACAAATGTTCACGATTAACTTCCACGGTGAAGGAATAACATCGTGCAATAAAAATCAAACCCGCAAAACTATAATTTGCGTAATTACTGGTGATAGGACCTCTTGTGAGTCCGCACGGGTAGGGACAACCGCCCCGCCTATTTCTGCCGCGAAGCAGTAATGCGTTACGGTATGAAGGGTAGGGCAGCCGTTGTAACTATACTGAGACTTTAGAACTTAAATCTCAAGATTGGTGGCGTATTTACGTTAATGTTTATGGGCTCCAGCAACCACTTAACACCGGGTGGGCTGTGAGCTCGTCCAACCATGTAAGCAATAACAAAAATAAAACAAAAAAAATTACCTTAGCAAGCAAAGGGATATTTCAGTTCCGCGATGTACAGCTCATAAAATTTAAGTTTGTTGACCCCAGTTTTGTTCGCTTTACATCGCGGAACTAAAACATCCGATTTCCGTTTATGGAAAAATAATGTATTTATTTCGTTTCGCTCATAAGTCTATTTATCAATAAGGTTTCAATCATACAAAAACAAAACAAATATAAAGAATCACAGGTTTTTTTTCATTTATTTCAATAATAACTAAAGAAATGCAAAGATCTTATCAACTTTACACTCCAGTAACTTCTAGGGCTACCATACGGTTAACGTTCAATGAGAAATTAATGATTACAAAAAACGTTACACAGTAAACTTTAATTTTTCTTCCTATAAGTCTTGTATAGTCTTTCGTTAACGCCCCGCACTTGATTCAGAACATTACCACTTACAATAATACACGTACAATACTCGCAAAACGTCCATTCATATTCAGCACATACATAAAAACGAGTCGCGCATACAGACAGACAAACGTTATGGAAATGTTGACGCGCAGTCAGCTATCACTCATATTAACATGGTAGTTACGTTGGGCGTAACAAATCGTTACACAGCGCTCCGCAGTTCCAATTACCCATCCTCTTTCGGAGGTGTGAACCAGCCTGAAAATTAGATAAATATTAGTATGAAACGATTACAACTCTTACATGAATAGGGGCTTCGTCTATCTATACATATAAATAAAATTGGAGTGTCTGTTTGTAATAGTGAAATAACCGCTTTTTACTACATGCATATGAATATATATACGGTACATACACTAAAATAACATTTTTTACAATTTTTGTCTGTCTGTTTGTTTGTTCCGGCTAATCTCTGGAACGGCTGGACCGATTTTGACGAGACTTTCAGTAATAGGTAGCTGATGATATAAGGAGTAACTTAAACATTTTTAGAATAGCTTGGCCCCGCGGCGTCGCCCGCTGTACTACAATAACCGCGGGTAACATCGCGGGACTCAACTATCAATAATAAAATTTAATATTTCCGAAGCGAAGCGAGGGCGGGTCGCCAGTACTAATATATAAATCTACAGTGGTATTTACGGATGTTCCGTTATAACTACTGAACCGTGCATCCGATTGACTTGAAACTTGGTATCCATGTAGAAAATACATATACTTAAAGGATAGGCTAATATTTATATGAGTGTTGGACTCCCTACACCAGTTGCGGGGGCGTTAATGATCAGAATCTTTGTGGGGGTGAGAAATAATAATGTTAATTTTACCCAGCGAAGCGGACGGGTACAGCTAGTTTGTTATAATGTACGTATTTACGATAGTAATTATGTTGTTGGAAAACAGAATATATTAAACATTCATATATTTTTACACAACAGAGTTTATGTTAAAAATATGTACTAATCATGTTTAGTTCGTATTCAGACATTTCTTCAATAAAAAAATACATTAAATGTTGTTTTTATTAATTTGTTCATTGTATTTGTAACTAACTATAGTCAACAATTATTTGGATTTAAAAAAGCTTTTCAAGAATGTAATTCAAAATAATATCATATGAACGTACTCATTAAATTTATTAATAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ORF
ATGACTCCGATATTATACAAGACTGACGCCAGTCCGCCTGCTAGGGCTGTGATGATGATTGTTGATATATTGGGACTAAAAGTTGACGAGCAGGAACTGAATCCAATATTACGCCAACAAGACACACCGGAATTTAAAAAAAAAAATCCAATGAGAACTATTCCTATATTAGAGGAAGGAGATTTCTACCTCGCGGATAGTCACGCCATTATGTTGTACTTGATCGATAAATACGGTAAACCGGAACACGCTCATCTCTATCCGAGCGAGAAAAGGAAACGAGCTACAATAAATCAACGACTTTTCTTTGACTGCGGAGTGCTATTCCCTAGATTGAGGGCCGTTATGGCACCAACGTACGCAGGAAAATTAGCGGAATTGAATCGAAACATGATCAAGAACATCGAGGATGCTTATTCAATAATGGAATCCTATCTAACAGAGAATTTGTATCTAGCTGATGAAGTTGTCACTGTAGCGGACATAAGCGCAATAACGACTATTTCGTCTTTGAACGGCTTGTACCCGGTAGATGAGAAAAGATATCCAAAACTTAGCAAATGGATAAACAGAATGAACGATAAAGAATATTGTAGAAAGATCAACACTCCCGGAAGCGAGCTACATGTGGCCGGTTTGATAGCCTTAATGGACAATACTAAACACAATCAGCAATCAAAACTTTAG
Protein
MTPILYKTDASPPARAVMMIVDILGLKVDEQELNPILRQQDTPEFKKKNPMRTIPILEEGDFYLADSHAIMLYLIDKYGKPEHAHLYPSEKRKRATINQRLFFDCGVLFPRLRAVMAPTYAGKLAELNRNMIKNIEDAYSIMESYLTENLYLADEVVTVADISAITTISSLNGLYPVDEKRYPKLSKWINRMNDKEYCRKINTPGSELHVAGLIALMDNTKHNQQSKL*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13409.1 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF13410.1 | Glutathione S-transferase, C-terminal domain | |
| Pfam/Hmmer3 | PF02798.15 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF13417.1 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF00043.20 | Glutathione S-transferase, C-terminal domain | |
| Pfam/Hmmer3 | PF12699.2 | phiKZ-like phage internal head proteins | |
| BLASTP/NCBI-nr | NP_001108465 | glutathione S-transferase epsilon 6 [Bombyx mori] gb|ABY66600.1| glutathione S-transferase 12 [Bombyx mori] | 1e-163 |
| InterPro | IPR010987 | Glutathione-S-Trfase_C-like | |
| InterPro | IPR017933 | Glutathione_S_Trfase/Cl_chnl_C | |
| InterPro | IPR004045 | Glutathione_S-Trfase_N | |
| InterPro | IPR012336 | Thioredoxin-like_fold | |
| Gene Ontology(MF) | GO:0005515 | protein binding |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS204831 | DPSCF300221 | 337455 | 339881 | + |
| H. melpomene | HMEL014394 | HE671448 | 343949 | 347280 | + |
| P. xylostella | Px011036.1 | scaffold_41 | 579601 | 580967 | + |