KAIKObase gene description page [BMgn002698/Gene02552]
Outline
| Official gene ID | BMgn002698 |
|---|---|
| Local gene ID | Gene02552 |
| Chromosome | chr5 |
| Start (Chr.) | 5121189 |
| End (Chr.) | 5124247 |
| Scaffold | Bm_scaf20 |
| Start (Scaf.) | 3459935 |
| End (Scaf.) | 3462993 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| NM_001128314.1 | publicly available mRNA | No |
| AK378347 | full-length cDNA | Yes |
| BGIBMGA002698 | predicted gene | No |
Representative sequence
Nucleotide
TAAATGAATTGAGTCTGATATGGTCAAATGAACGGTAGTAATGCGGCTTAAAGTTATATTACCTCTGCTTTTCTTCGCCAGTATCTCTGGTGAGGACTTTGAGTTGCCCATAGTAAATATAGGACAAGGCGCTGTGCTCGGTTCTCATGCTCACGATGGGGAATATTTTACGTTTTACGGGATCCCTTATGCCGATTCTACGTCAGGACCTCATCGGTTTAAGGCACCATCATCACCTCCAAAATTTGAAGGTGCCTTTGTAGCGAACAGAAGAGATGTAAAATGTGTAAGACCACTTGGAGTGGGCTATGAAGGGACAGAGGATTGTCTAGTAGTTGACGTGTTAACGCCTAATCTGGATGCTGCAGCTCAACTACCAGTGATGGTCTGGGTGAAGGGAAAAGAGTTCGACAGTGAATATAATCAAGATTTTTCATTCCGTAATTTCGTCCAGAAAGATGTCGTTGTAGTTTCAATCAACTTCCGTGAATCTATACTAGGATTTTTATGTTTGGGCACTGAAGTGGCTCCGGGAAATGCTGGATTGAAAGATATCATAGCCGGATTGAAATGGGTAAAAGAAAATATTGCTCATTTTGGAGGAAACCCAGACGATGTTACTTTGTTTGGTCATGGTAGTGGTGCTGCTGCTGTTGATTTGGTTACTTTGTCACCCTTAGCTAATGGATTAGTACACAAAGCTATAGCACAAAGCGGTAATGCATTTGCTCCATGGGCTGTAACCCGTGACAACTTAAACTATGCCATTCAAGTAGCAGAGGCTCTTGGACATATCGTGACGAACATTCAGGAACTCTCCGAAATATTTACTAGAACCAGTGTAGCTGCACTTATGGCCGTAATTAATGAATTGGATCTTACAGATAACTCATTGGCGTTTGCTCCATGCTTAGAACGAGAAGCGTTGAGTGTAGAATCATTTATCACTAAATCGCCCTACCAAACAATTTTAGATGGAGAATTTTTACAAATACCTTTCATGACTGGGTTTGTAGAAAACGAAGGTACAATTCGTGCCACAGAAGCAATAGAACACGACTGGTTGCAAAGAATGGAAACTTCATTTCCAGACTTTCTCCAACCGGACTTACAATTTGAAAACGCAGAGGGAGAATCAGCAATTGCAGAGGAAATAAAAGATTTTTATTTCAAAAACGAACTTATAAGTATGTTCAATATTGAGGACTACCTATCGTATCATGGTGATACAATGATACTAGTGTCAACAATTAGAGAAGCTCGTATTCGTGCTGCAAGTTCAAGTTCACCAGTTTATTTATATCAGTTTTCGTACAGTGGATCTTTAGGAAAACCTTTCGTTGGACCTATTCAAGTCGACGCAGCTGCACATAGCGAAGAATTGGCCTATATGTTTTATGAAAAATCGGATGATAATATCCCTTTGCTCGATCTTACAATTGGAGATATTTTAGTCGAAAGATGGACAAACTTCGCCAAAACTGGGGCACCGGTAAGTGAGACTTCTCAGGTAGTGTGGAGACCTTTTACCACCGAAAACAACCATTATTTAAGAATCCTTGATGACAGCGAAGTCCGAGGTGATCAAGAAACTACACTGGAACTGGATTTACAAAACCCTTATCCAGAAACACTATTATTCTGGGAGGAAATTTACAATGAACATTTCTTGGATGCCAGAGGTAAATGGGAACTAAGTGAAAGGACTGAGGGAACCGAAGACGGTGATGAAAACGGAAGTGGAGAAGAACTTCCGGAAAATGGTGGAGAGGCCGACAACGGAAGTGGTGAAGAAGTAGACGAGGGAAATGAAGGCGAGCCTGAAGAAGACGAGGGAAATGAAGGCGAGCCTGAAGAAGACGAGGGAAATGAAGGAGAGCCTGAAGAAGATAATACACCCGGATCAGCATCAACGGCTATAGCTTATACGTTTCCCATACTAACCGTGTTCGCGCTCATAAACAAATTGCACTTATCTCAGATCATGTCTTAAACCCAGTAGATAACTTCTTCTACTGATGTAGTTTAACGATAAGAAAGTTAGATGAACACTTCATTGGATTTCTCCGGAAATTCAATAAAAGGGTTCGCTACAGAATCCATTTAATTTCATATCAGACATTAATATAGTTGTAAAATCGTATGAATGAGTCGTTCGAAGGAATAATTTTATGTTTCTTACAACTTGTATGGGCATAAGCTATTGTATTTTACTAGTTTTTAATAATTTTTAGAAAATGTACACTTTATATTTCGAAATAAATAGTGAATTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ORF
ATGCGGCTTAAAGTTATATTACCTCTGCTTTTCTTCGCCAGTATCTCTGGTGAGGACTTTGAGTTGCCCATAGTAAATATAGGACAAGGCGCTGTGCTCGGTTCTCATGCTCACGATGGGGAATATTTTACGTTTTACGGGATCCCTTATGCCGATTCTACGTCAGGACCTCATCGGTTTAAGGCACCATCATCACCTCCAAAATTTGAAGGTGCCTTTGTAGCGAACAGAAGAGATGTAAAATGTGTAAGACCACTTGGAGTGGGCTATGAAGGGACAGAGGATTGTCTAGTAGTTGACGTGTTAACGCCTAATCTGGATGCTGCAGCTCAACTACCAGTGATGGTCTGGGTGAAGGGAAAAGAGTTCGACAGTGAATATAATCAAGATTTTTCATTCCGTAATTTCGTCCAGAAAGATGTCGTTGTAGTTTCAATCAACTTCCGTGAATCTATACTAGGATTTTTATGTTTGGGCACTGAAGTGGCTCCGGGAAATGCTGGATTGAAAGATATCATAGCCGGATTGAAATGGGTAAAAGAAAATATTGCTCATTTTGGAGGAAACCCAGACGATGTTACTTTGTTTGGTCATGGTAGTGGTGCTGCTGCTGTTGATTTGGTTACTTTGTCACCCTTAGCTAATGGATTAGTACACAAAGCTATAGCACAAAGCGGTAATGCATTTGCTCCATGGGCTGTAACCCGTGACAACTTAAACTATGCCATTCAAGTAGCAGAGGCTCTTGGACATATCGTGACGAACATTCAGGAACTCTCCGAAATATTTACTAGAACCAGTGTAGCTGCACTTATGGCCGTAATTAATGAATTGGATCTTACAGATAACTCATTGGCGTTTGCTCCATGCTTAGAACGAGAAGCGTTGAGTGTAGAATCATTTATCACTAAATCGCCCTACCAAACAATTTTAGATGGAGAATTTTTACAAATACCTTTCATGACTGGGTTTGTAGAAAACGAAGGTACAATTCGTGCCACAGAAGCAATAGAACACGACTGGTTGCAAAGAATGGAAACTTCATTTCCAGACTTTCTCCAACCGGACTTACAATTTGAAAACGCAGAGGGAGAATCAGCAATTGCAGAGGAAATAAAAGATTTTTATTTCAAAAACGAACTTATAAGTATGTTCAATATTGAGGACTACCTATCGTATCATGGTGATACAATGATACTAGTGTCAACAATTAGAGAAGCTCGTATTCGTGCTGCAAGTTCAAGTTCACCAGTTTATTTATATCAGTTTTCGTACAGTGGATCTTTAGGAAAACCTTTCGTTGGACCTATTCAAGTCGACGCAGCTGCACATAGCGAAGAATTGGCCTATATGTTTTATGAAAAATCGGATGATAATATCCCTTTGCTCGATCTTACAATTGGAGATATTTTAGTCGAAAGATGGACAAACTTCGCCAAAACTGGGGCACCGGTAAGTGAGACTTCTCAGGTAGTGTGGAGACCTTTTACCACCGAAAACAACCATTATTTAAGAATCCTTGATGACAGCGAAGTCCGAGGTGATCAAGAAACTACACTGGAACTGGATTTACAAAACCCTTATCCAGAAACACTATTATTCTGGGAGGAAATTTACAATGAACATTTCTTGGATGCCAGAGGTAAATGGGAACTAAGTGAAAGGACTGAGGGAACCGAAGACGGTGATGAAAACGGAAGTGGAGAAGAACTTCCGGAAAATGGTGGAGAGGCCGACAACGGAAGTGGTGAAGAAGTAGACGAGGGAAATGAAGGCGAGCCTGAAGAAGACGAGGGAAATGAAGGCGAGCCTGAAGAAGACGAGGGAAATGAAGGAGAGCCTGAAGAAGATAATACACCCGGATCAGCATCAACGGCTATAGCTTATACGTTTCCCATACTAACCGTGTTCGCGCTCATAAACAAATTGCACTTATCTCAGATCATGTCTTAA
Protein
MRLKVILPLLFFASISGEDFELPIVNIGQGAVLGSHAHDGEYFTFYGIPYADSTSGPHRFKAPSSPPKFEGAFVANRRDVKCVRPLGVGYEGTEDCLVVDVLTPNLDAAAQLPVMVWVKGKEFDSEYNQDFSFRNFVQKDVVVVSINFRESILGFLCLGTEVAPGNAGLKDIIAGLKWVKENIAHFGGNPDDVTLFGHGSGAAAVDLVTLSPLANGLVHKAIAQSGNAFAPWAVTRDNLNYAIQVAEALGHIVTNIQELSEIFTRTSVAALMAVINELDLTDNSLAFAPCLEREALSVESFITKSPYQTILDGEFLQIPFMTGFVENEGTIRATEAIEHDWLQRMETSFPDFLQPDLQFENAEGESAIAEEIKDFYFKNELISMFNIEDYLSYHGDTMILVSTIREARIRAASSSSPVYLYQFSYSGSLGKPFVGPIQVDAAAHSEELAYMFYEKSDDNIPLLDLTIGDILVERWTNFAKTGAPVSETSQVVWRPFTTENNHYLRILDDSEVRGDQETTLELDLQNPYPETLLFWEEIYNEHFLDARGKWELSERTEGTEDGDENGSGEELPENGGEADNGSGEEVDEGNEGEPEEDEGNEGEPEEDEGNEGEPEEDNTPGSASTAIAYTFPILTVFALINKLHLSQIMS*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF04147.7 | Nop14-like family | |
| Pfam/Hmmer3 | PF05887.6 | Procyclic acidic repetitive protein (PARP) | |
| Pfam/Hmmer3 | PF07859.8 | alpha/beta hydrolase fold | |
| Pfam/Hmmer3 | PF05285.7 | SDA1 | |
| Pfam/Hmmer3 | PF03430.8 | Trans-activating transcriptional regulator | |
| Pfam/Hmmer3 | PF00135.23 | Carboxylesterase family | |
| BLASTP/NCBI-nr | NP_001121786 | alpha-esterase 3 precursor [Bombyx mori] gb|ACD80423.1| carboxylesterase CarE-14 [Bombyx mori] | 0.0 |
| InterPro | IPR002018 | CarbesteraseB |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| H. melpomene | HMEL015496 | HE672040 | 228697 | 231153 | - |
| M. sexta | Msex004428-RA | scaffold00058 | 210018 | 213920 | - |
| P. xylostella | Px005687.1 | scaffold_203 | 365935 | 369740 | + |