KAIKObase gene description page [BMgn002712/Gene02526]
Outline
| Official gene ID | BMgn002712 |
|---|---|
| Local gene ID | Gene02526 |
| Chromosome | chr5 |
| Start (Chr.) | 4077842 |
| End (Chr.) | 4082706 |
| Scaffold | Bm_scaf20 |
| Start (Scaf.) | 4501476 |
| End (Scaf.) | 4506340 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| BGIBMGA002712 | predicted gene | Yes |
Representative sequence
Nucleotide
ATGGCTGTCGGTATTTTAGACAAAGTGACTGTTACGATTCAGGTCCTCTTAGACGAATTCGAAAATAAAGACGCAATTATTGTTAGAAATCTGAAGGTTTGGACGCCAGAAGAGAAGTCAATATGGAGAAAAGTTGCTAAACCAAAAACTGTGATAATCGATAATGCGTGTATAAGGGAAGGGGAATTTGCAGCAATCATCGGGCCGAGTGGAGCAGGAAAAACAACATTTCTAGTGTCGTTAGCCGGGAAATGCACATTACCATTTGAAGGCACCGTTACGATCAACGGTAGAAATGTCAGGGATCTGACGGGTGCCGAGATCGTGCCCCAGTTCGACGTGTTCACGGACAGCTTGACTGTTATGGAGCAACTTGTTTTTATGACAGAAATGAAACTAGGTAACAGTACGAAGCAACCGAACAAATCAATTCTGAATACAGTCATCGAAGAATTCAAACTAAGCGCACACGTTGAAACGCGCATAGGATCATTATCTGGCGGAGAAAGGAGGTTGTTGTCTTTAGCCACTTCGTTCTTATCGAATCCACAAATATTGATATGCGACGAACCCACTACCGGCTTGGATAGTTATAACGCATCACAAGTAATTGGCATATTAAAGAAATTGTCAGCGTCCGGTAAGATTGTCATATGTTCTGTTCATCAACCTTCGTGTGATATCTTCAAAGAGTTTAACTCTATTCTTTTGATGGCTGAGGGAAATCTACTTTTCCATGGAACTCAGGATGCGTGCAAATCGTTCTTTGAAAGCATTGACCTGCATTGCCCGTTGAACTATAATCCAGCAGAATTTTACATACGAGCTGTATCCAATCACAATGGAGTATGTATCAAAAAGATGCTGGAAAATTACCAGGACCAGTCTTTGGACTGTGACGAAACCGGTTTGGAAGTTAACCTAATCTATAAAAAGTGA
ORF
Protein
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13558.1 | Putative exonuclease SbcCD, C subunit | |
| Pfam/Hmmer3 | PF13207.1 | AAA domain | |
| Pfam/Hmmer3 | PF03205.9 | Molybdopterin guanine dinucleotide synthesis protein B | |
| Pfam/Hmmer3 | PF13481.1 | AAA domain | |
| Pfam/Hmmer3 | PF01695.12 | IstB-like ATP binding protein | |
| Pfam/Hmmer3 | PF13245.1 | Part of AAA domain | |
| Pfam/Hmmer3 | PF04665.7 | Poxvirus A32 protein | |
| Pfam/Hmmer3 | PF13401.1 | AAA domain | |
| Pfam/Hmmer3 | PF13191.1 | AAA ATPase domain | |
| Pfam/Hmmer3 | PF13479.1 | AAA domain | |
| Pfam/Hmmer3 | PF13604.1 | AAA domain | |
| Pfam/Hmmer3 | PF13521.1 | AAA domain | |
| Pfam/Hmmer3 | PF13671.1 | AAA domain | |
| Pfam/Hmmer3 | PF13555.1 | P-loop containing region of AAA domain | |
| Pfam/Hmmer3 | PF00004.24 | ATPase family associated with various cellular activities (AAA) | |
| Pfam/Hmmer3 | PF13238.1 | AAA domain | |
| Pfam/Hmmer3 | PF00005.22 | ABC transporter | |
| Pfam/Hmmer3 | PF13476.1 | AAA domain | |
| Pfam/Hmmer3 | PF13173.1 | AAA domain | |
| Pfam/Hmmer3 | PF03193.11 | Protein of unknown function, DUF258 | |
| Pfam/Hmmer3 | PF13304.1 | AAA domain | |
| Pfam/Hmmer3 | PF03266.10 | NTPase | |
| Pfam/Hmmer3 | PF13175.1 | AAA ATPase domain | |
| BLASTP/NCBI-nr | EHJ66508 | hypothetical protein KGM_03345 [Danaus plexippus] | 1e-59 |
| InterPro | IPR003593 | AAA+_ATPase | |
| InterPro | IPR003439 | ABC_transporter-like | |
| InterPro | IPR017871 | ABC_transporter_CS | |
| Gene Ontology(MF) | GO:0005524 | ATP binding | |
| Gene Ontology(MF) | GO:0000166 | nucleotide binding | |
| Gene Ontology(MF) | GO:0017111 | nucleoside-triphosphatase activity | |
| Gene Ontology(MF) | GO:0016887 | ATPase activity |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS201534 | DPSCF300006 | 1425098 | 1430578 | + |
| H. melpomene | HMEL009082 | HE670855 | 516689 | 526173 | - |
| M. sexta | Msex015655-RA | scaffold01244 | 12486 | 15510 | - |
| M. sexta | Msex015654-RA | scaffold01244 | 4 | 10510 | - |