KAIKObase gene description page [BMgn002924/Gene05836]
Outline
| Official gene ID | BMgn002924 |
|---|---|
| Local gene ID | Gene05836 |
| Chromosome | chr10 |
| Start (Chr.) | 15868838 |
| End (Chr.) | 15883260 |
| Scaffold | Bm_scaf30 |
| Start (Scaf.) | 3320115 |
| End (Scaf.) | 3334537 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| BGIBMGA002924 | predicted gene | Yes |
Representative sequence
Nucleotide
ATGACTGACAAGCTTATTCTTACAGTCGGAACAGTGATAGACGGCGAAATCATCATGAACGGTCGTCCAGTCTGCAGCTACGTGGACAGAGAAAGCGGCTACATGCATCAAGACGACATCTTCGCTGAAAACCTAACAGTTATCGAGCATCTAACGGTCATGGCTCGTCTACGCATGGATAGACGCACATCAACTGTAGCCAGGAAACGCCGGGTGAATCAGTTGATGAGGCAGTTGTCTCTCTACGAGTCTAGATTCACGAGGATAGGAGGCCTCGATGGACATAAGACCTTGTCTGGTGGAGAAAGGAAAAGGCTGGCTTTCGCTACTGAATTACTAACGGATCCGGGGCTTCTGTTTTGCGACGAGCCCACCACAGGATTAGACTCCTCGTCAGCGCTGAAGCTAGTATCACTCCTCCGAGCCAGTGCAGCCCAGGGAAAGACCGTGATATGCACTATACACCAGCCCTCCTCAGAACTGATGGCACATTTCGACAAGCTAGTCTTGTTAGCTGAAGGAAGGATCGCCTTTGCGGGAAACGCATCTGCTGCTTTGGGATTTTTCGAAAGTCTCGGCTACCACTGTCCCTTAACGTACAACCCGACGGATTACTTCATAAAAGTGTTGGCTTTAACTCCTGGCTCCGAAGCTGCGTCACGTCACGCTATCAAGAGTATATGCGACCGGTTTGCCGTCAGCGATGTCGCTAAGGAACTGGACATGGAGATTCATTTGGAGTATCATCTTATGGATAATGAGGTGGAGGACTCAAGGAGGTTAAGAGGTGACAGCTTTAGGCCACCACATTTCTACACGAAGATAATGTGGCTCGTGTACAGATACCTGCTGATGATCATCAGAGATCCGAGGGTTCAACTGGTCCGTATACTACAGAAATTGGCTATAGCTTTAACAGCTGGCGTTTGTTTCTTGGGCACGCCCCGACTAACACAAGCCGGGGTTCAAGACGTCCAAGGGGCTCTGTTCATCATCATAGCTGAGAACACGTTCAGCCCCATGTATTCAGTTCTTCACATGTTTCCTGAGGAGTTTCCGTTGTTCAACAGAGAACTTAAGGCTGGACTGTACTCCACGCCGGTCTATTATACTGCCAGAATGATCGCTTTGTTCCCAGGGCTGTTGATAGAGCCGGTGCTGTTCACTGGTGTGGTGTATTGGCTCGCCGGGCTACGGTACAGTGCCTACGCCATCGGATTGACCATATTCATCTCGATTCTGGTGCTCAACGTCGCCATAGCGTGCGGTTCGTTCTTCTCGTGCGCTTTTGGCTCGATGCCGTTGGCGATCGCCTATCTGGTGCCCTTTGACTATTCCCTAATGATGACATCCGGGATATTCATCAAATTAAGGTAA
ORF
Protein
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF01061.19 | ABC-2 type transporter | |
| Pfam/Hmmer3 | PF13558.1 | Putative exonuclease SbcCD, C subunit | |
| Pfam/Hmmer3 | PF13304.1 | AAA domain | |
| Pfam/Hmmer3 | PF00005.22 | ABC transporter | |
| BLASTP/NCBI-nr | NP_001243922 | scarlet [Bombyx mori] dbj|BAK08373.1| scarlet [Bombyx mori] | 0.0 |
| InterPro | IPR003439 | ABC_transporter-like | |
| InterPro | IPR013525 | ABC_2_trans | |
| InterPro | IPR017871 | ABC_transporter_CS | |
| Gene Ontology(CC) | GO:0016020 | membrane | |
| Gene Ontology(MF) | GO:0005524 | ATP binding | |
| Gene Ontology(MF) | GO:0016887 | ATPase activity |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS200174 | DPSCF300128 | 432714 | 447752 | + |
| M. sexta | Msex001267-RA | scaffold00013 | 747908 | 772630 | + |
| P. xylostella | Px008370.3 | scaffold_3 | 1084031 | 1102351 | - |