KAIKObase gene description page [BMgn003683/Gene02858]
Outline
| Official gene ID | BMgn003683 |
|---|---|
| Local gene ID | Gene02858 |
| Chromosome | chr5 |
| Start (Chr.) | 13604506 |
| End (Chr.) | 13616954 |
| Scaffold | Bm_scaf9 |
| Start (Scaf.) | 4108466 |
| End (Scaf.) | 4120914 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| NM_001110363.1 | publicly available mRNA | No |
| AK377678 | full-length cDNA | No |
| AK386871 | full-length cDNA | Yes |
| AK386911 | full-length cDNA | No |
| BGIBMGA003683 | predicted gene | No |
Representative sequence
Nucleotide
GCGATCCAAAGAAGACGCCTATAAATAACAAAATGTTCGTTTACTTGATATTTATCGCTTCGTTTTTCTTATTAATTCATTTAGCTTTCAATTATAATTCGAAAGCTGTGATGATGAATAAAGTTCCTGGTCCAAAGTTGTCGTTCATTCTCGGGAATGCACCAGAGATAATGATGTTGTCATCAGTTGAATTAATGAAACTGGGCAGGAAATTCGCAAGTCGCTGGGATGGAATATATAGGATTTGGGCGTTTCCTTTGTCCGTTATAAATATATACAATCCGGATGACGTAGAGGTGATAGTTTCGACCACAAAACACAACGAAAAGAGTTCTGTGTATAAATTTTTGAAGCCGTGGCTTGGGGATGGATTGCTAATAAGTAAAGGAGAAAAATGGCAGCAAAGAAGAAAAATCCTTACGCCCGCTTTCCACTTCAATATCTTGCGACAGTTCAGTGTCATAATTGAAGAAAATTCTCAACGTTTGGTGGAATCATTGGAGAAATGCATCGGAAAACCTATAGACATAGTACCTGTAGTATCAGAGTATACACTGAATTCCATTTGTGAGACCTCAATGGGCACTCAACTAAGCGACAAAACAGAAGATGCGTGGAAGGCATACAAGGACGCCATATATGAGCTCGGACCGTACTTCTTTCAAAGATTCACTAGGGTTTATTTATATTTTGACATTATCTTCTATTTAACATCTTTATGGAGAAAAATGAAAAAACCTTTAAAGTCACTCCACGGATTTACTTCTACCGTTATAAAAGAAAGGAAAATTTACGTTGAACAAAATGGTGTTAAATTCGGCGAGGACGTCAACGATGATGACCTTTACATATACAAAAAGAGGAGAAAAACTGCCATGCTGGATTTACTGATAGCTGCGCAAAAAGACGGAGAGATCGACGATCACGGAATACAGGAAGAAGTGGACACTTTTATGTTCGAAGGTCACGATACCACTGCGTCTGGATTGACATTTTGTTTTATGCTACTCGCCAATCACAGAGCAGTTCAGGATAAGATTGTGGAAGAAATAAATTATATTATGGGAGATTCAACTCGACGCGCGAACTTGGAGGACTTGTCCAAGATGAAGTACTTGGAATGTTGCATTAAGGAGTCTTTAAGACTATATCCACCTGTGCATTTTATTAGCCGTAACTTAAACGAGCCTGTTGTTTTAAGTAACTATGAAATACCCGCCGGTTCGTTCTGCCACATTCACATCTTCGACCTACATCGACGCGCCGACATATACGAAGATCCACTAGTATACGATCCAGATCGGTTCTCTCAAGAAAACAGCAAAGGTCGACATCCGTACGCATACATACCATTCAGTGCTGGACCGAGAAATTGCATTGGTCAGAAATTCGCCATGATAGAAATGAAATCTGCCGTTGCTGAAGTACTGCGAAAATATGAACTTGTGCCGGTAACGCGTCCTTCAGAAATTGAACTTATTGCCGACATCATACTGAGGAACTCTGGCCCGGTTGAGATTACATTTAATAAAAGGACCAAATAAATTCAACTTAAGGTCAAAAGAATATATTTACGACTCGATTAAATTGTGTCCAAGAAAACTGTTAACGCCGGAAATAATAAAATAAAAAAAACAGGACCAAGCATTAGTAAATATGTGTTTTGTTACATATTTAGACGTTACAAATTTAAAATTTAAAGAAAATATATTCACTTAATTTACGCTGCATCCAACAATTGAGTTTCTAAGACTAGTAAAAATGTAATATTATATATTAAAGGAATATTTATGCATTATGTACATAATATGTGCTAGTGCAATATTGTGTTGTGTGTTTTTTGTGTTTATTAACACACATTTATTATGTATTTCAAAACGGTCTGAATGTTTTAATCTTTTTTATGTGTACTAAACATCTATTTTTCTTTATATTTTGTACTTTTATCGTTATAAAATCAGTTTTATCTATAATATTTAATTGTATAAACGCTGAATAAATACATTATACTTTTTGTTTCAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAA
ORF
ATGTTCGTTTACTTGATATTTATCGCTTCGTTTTTCTTATTAATTCATTTAGCTTTCAATTATAATTCGAAAGCTGTGATGATGAATAAAGTTCCTGGTCCAAAGTTGTCGTTCATTCTCGGGAATGCACCAGAGATAATGATGTTGTCATCAGTTGAATTAATGAAACTGGGCAGGAAATTCGCAAGTCGCTGGGATGGAATATATAGGATTTGGGCGTTTCCTTTGTCCGTTATAAATATATACAATCCGGATGACGTAGAGGTGATAGTTTCGACCACAAAACACAACGAAAAGAGTTCTGTGTATAAATTTTTGAAGCCGTGGCTTGGGGATGGATTGCTAATAAGTAAAGGAGAAAAATGGCAGCAAAGAAGAAAAATCCTTACGCCCGCTTTCCACTTCAATATCTTGCGACAGTTCAGTGTCATAATTGAAGAAAATTCTCAACGTTTGGTGGAATCATTGGAGAAATGCATCGGAAAACCTATAGACATAGTACCTGTAGTATCAGAGTATACACTGAATTCCATTTGTGAGACCTCAATGGGCACTCAACTAAGCGACAAAACAGAAGATGCGTGGAAGGCATACAAGGACGCCATATATGAGCTCGGACCGTACTTCTTTCAAAGATTCACTAGGGTTTATTTATATTTTGACATTATCTTCTATTTAACATCTTTATGGAGAAAAATGAAAAAACCTTTAAAGTCACTCCACGGATTTACTTCTACCGTTATAAAAGAAAGGAAAATTTACGTTGAACAAAATGGTGTTAAATTCGGCGAGGACGTCAACGATGATGACCTTTACATATACAAAAAGAGGAGAAAAACTGCCATGCTGGATTTACTGATAGCTGCGCAAAAAGACGGAGAGATCGACGATCACGGAATACAGGAAGAAGTGGACACTTTTATGTTCGAAGGTCACGATACCACTGCGTCTGGATTGACATTTTGTTTTATGCTACTCGCCAATCACAGAGCAGTTCAGGATAAGATTGTGGAAGAAATAAATTATATTATGGGAGATTCAACTCGACGCGCGAACTTGGAGGACTTGTCCAAGATGAAGTACTTGGAATGTTGCATTAAGGAGTCTTTAAGACTATATCCACCTGTGCATTTTATTAGCCGTAACTTAAACGAGCCTGTTGTTTTAAGTAACTATGAAATACCCGCCGGTTCGTTCTGCCACATTCACATCTTCGACCTACATCGACGCGCCGACATATACGAAGATCCACTAGTATACGATCCAGATCGGTTCTCTCAAGAAAACAGCAAAGGTCGACATCCGTACGCATACATACCATTCAGTGCTGGACCGAGAAATTGCATTGGTCAGAAATTCGCCATGATAGAAATGAAATCTGCCGTTGCTGAAGTACTGCGAAAATATGAACTTGTGCCGGTAACGCGTCCTTCAGAAATTGAACTTATTGCCGACATCATACTGAGGAACTCTGGCCCGGTTGAGATTACATTTAATAAAAGGACCAAATAA
Protein
MFVYLIFIASFFLLIHLAFNYNSKAVMMNKVPGPKLSFILGNAPEIMMLSSVELMKLGRKFASRWDGIYRIWAFPLSVINIYNPDDVEVIVSTTKHNEKSSVYKFLKPWLGDGLLISKGEKWQQRRKILTPAFHFNILRQFSVIIEENSQRLVESLEKCIGKPIDIVPVVSEYTLNSICETSMGTQLSDKTEDAWKAYKDAIYELGPYFFQRFTRVYLYFDIIFYLTSLWRKMKKPLKSLHGFTSTVIKERKIYVEQNGVKFGEDVNDDDLYIYKKRRKTAMLDLLIAAQKDGEIDDHGIQEEVDTFMFEGHDTTASGLTFCFMLLANHRAVQDKIVEEINYIMGDSTRRANLEDLSKMKYLECCIKESLRLYPPVHFISRNLNEPVVLSNYEIPAGSFCHIHIFDLHRRADIYEDPLVYDPDRFSQENSKGRHPYAYIPFSAGPRNCIGQKFAMIEMKSAVAEVLRKYELVPVTRPSEIELIADIILRNSGPVEITFNKRTK*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF02637.13 | GatB domain | |
| Pfam/Hmmer3 | PF00067.17 | Cytochrome P450 | |
| BLASTP/NCBI-nr | NP_001103833 | cytochrome P450 monooxygenase Cyp4M5 [Bombyx mori] gb|ABP87671.1| cytochrome P450 monooxygenase Cyp4M5 [Bombyx mori] | 0.0 |
| InterPro | IPR001128 | Cyt_P450 | |
| InterPro | IPR017972 | Cyt_P450_CS | |
| InterPro | IPR002401 | Cyt_P450_E_grp-I | |
| Gene Ontology(MF) | GO:0009055 | electron carrier activity | |
| Gene Ontology(MF) | GO:0020037 | heme binding | |
| Gene Ontology(MF) | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | |
| Gene Ontology(MF) | GO:0005506 | iron ion binding | |
| Gene Ontology(BP) | GO:0055114 | oxidation-reduction process |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|---|---|---|
| Gene02857 | BMgn003684 | chr5 | 13569380 | 13603253 | Bm_scaf9 | 4122167 | 4156040 | + |
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS212789 | DPSCF300788 | 3569 | 8071 | + |
| D. plexippus | DPOGS215623 | DPSCF300041 | 2050307 | 2054669 | - |
| D. plexippus | DPOGS215624 | DPSCF300041 | 2043909 | 2048015 | - |
| D. plexippus | DPOGS201061 | DPSCF300497 | 28139 | 34711 | + |
| H. melpomene | HMEL003581 | HE669216 | 221 | 6396 | - |
| H. melpomene | HMEL003582 | HE669216 | 10610 | 15956 | - |
| H. melpomene | HMEL008768 | HE670829 | 269104 | 275154 | - |
| H. melpomene | HMEL008770 | HE670829 | 276044 | 282180 | - |
| H. melpomene | HMEL003583 | HE669216 | 15932 | 24633 | - |
| H. melpomene | HMEL005934 | HE672016 | 217852 | 224091 | + |
| H. melpomene | HMEL005933 | HE672016 | 212577 | 216975 | + |
| M. sexta | Msex003511-RA | scaffold00046 | 377965 | 418320 | + |
| M. sexta | Msex011453-RA | scaffold00314 | 11735 | 54522 | + |
| P. xylostella | Px015962.1 | scaffold_754 | 4909 | 10482 | - |
| P. xylostella | Px006053.5 | scaffold_214 | 48369 | 61660 | - |