KAIKObase gene description page [BMgn003945/Gene10369]
Outline
| Official gene ID | BMgn003945 |
|---|---|
| Local gene ID | Gene10369 |
| Chromosome | chr17 |
| Start (Chr.) | 17513160 |
| End (Chr.) | 17529026 |
| Scaffold | Bm_scaf105 |
| Start (Scaf.) | 313846 |
| End (Scaf.) | 329712 |
| Direction | - |
Member sequences
| ID | Type | Representative |
|---|---|---|
| NM_001083610.1 | publicly available mRNA | No |
| AK383746 | full-length cDNA | Yes |
| AK384135 | full-length cDNA | No |
| AK383143 | full-length cDNA | No |
| AK383170 | full-length cDNA | No |
| BGIBMGA003945 | predicted gene | No |
Representative sequence
Nucleotide
GAGTCATAATCTATTTTTTCGCTCGGGTATGTGTTTGTTTTGAAGACCTGTGTGATGACACAATTGCGTCATCAAAACATACTTTGAGATACGAAGCATAAAGTTAAAAATACTGTTGTTTTAAATGAGAAACTTGCGGTTACGGACTCCTTCAATGAAGGAAAGGTCTACCTTCCCGGTCAATGAAAAATGATTCTCCTCATTTGGGCCATAGTGCTCATTGCCGCCTTCGTGCTGTTTTACAAACAAGCCTATTCTTTGTTCAGCAAGCACGGAGTGAAGGGCTTCACTCCGCTACCTTTCTTTGGCAACATGGGGCGTATTGTAATAAAAATGGATCATTTCTCGGACCATATACAAAGTTTATACGATTCATTCCCTGAGGAAAGATTCGTCGGAAGATACGAATTTCTCAACCCAATGGTTATAATTCGTGACATTGAGTTACTGAAGAAAATCACGGTTAAGGACTTCGAGCATTTCCTGGACCATCGGACTATCATCAACAAGGACACCGACCCGTTCTTCGGAAGGAGCTTGTTCTTCTTGAGAGATCAAGACTGGAAAGACATGCGCTCAACGCTTTCACCGGCGTTCACCAGCTCCAAAATGAAGCTCATGATGCCATTCATCGTTGAAGTGGGACAACAGATGAATAAAGCGCTAAAGCAGAGGATACAAGAAGCAGGGGTTGGCTACGTGGACATCGACTCCAAAGACCTGACCACTAGATACGCCAACGATGTGATCGCGTCCTGCGCCTTCGGTCTGAAGGTCGACTCCATCACCGAGGAGAACAACCAGTTCTACGCGATGGGGAAAGCCGCTTCTACTTTCAACTTCAGGCAGCTTCTCATTTTCTTTGGTCTTGCATCGGTCCCGAAGCTTGTGAAGATTCTACGCATTACGCTGTTTCAAAAAGAAATCAAAACCTTCTTCAGGGAACTGATCTTGGGCACCATGAAGAACAGGGAAGCACAAAACATTATCAGACCTGACATGATCCATCTACTCATGGAAGCTAAGAAAGGCAAGTTGAGGCACGATGAGAAATCCACAAAAGACAGCGACGCTGGCTTTGCTACCGTGGAAGAGTCCTCAGTCGGCAAAAAGGATATTAACCGAGTGTGGACTGACGATGACTTGGTCGCCCAAGCGGTTCTGTTTTTCGTCGCCGGCTTCGAAACAGTATCGTCAGCGATGACATTCCTGCTTCACGAGTTGGCTTTGAACCCTGAAGTGCAGGAGAAGCTGGTGGAAGAAATCCAAGAAAACGAGAAAAACAACAACGGCAAATTCGACTACAACTCCATTCAGAACATGGTGTATTTAGATATGGTGGTGTCAGAGGTCTTAAGATTGTGGCCACCCGTTATTGCCTTAGATAGAATCTGCGTTAAAGACTACAACTTGGGTAAACCAAATGACAAAAGCAAAGAAGATTTTATTATACGCAAAGATGTGGCGGTGGGTATACCAGTATGGGGCTTACATCGAGATCCCGAATTCTTCCCGAACCCCCTGAAATTCGATCCCGAAAGGTTCTCAGAGGAGAACAAACACAACATCAAACCCTTCAGTTACATGCCATTTGGTCTGGGACCTAGGAATTGTATAGGTTCAAGGTTCGCTTTGTGCGAAGTCAAGGTGATGACATACCAACTCCTCCAGCACATGGAGATATCTCCGTGCGAGAAGACCTGCATTCCCTCGAAACTCAGCAAGGAGACTTTCAACCTTCGCCTTGAAGGCGGTCATTGGATCAGGCTGAAGATTAGAAATTGAAACTATTCTAACTAGTATTTCTTCGGTTTCCGTGAATTGTAGACGTGATTACCCCTACTTTAACGATTAATCTGACAACCACGAAACTTATATACTTGAGACCTTAGAACTAACTATATTCCTGGTGAAACTGGAAAGGCCTCCGGGCCACCAGTAATCCTTCAATCATAAAAAAAAAAAACTAACTATACTTGAGACCTTAGAACTTATATCTCAAGGTGGGTGGCGCATTTACGTTGTGGATGTCTATGGGCTCCAGTAACCACTTAAAACCAGGTGGGCTGTGAGCTCGTCCACCCATCTAAGCAATAAAAAAACAAAACTCAAAAATCCGGAAACAATAACACCGCTACACTAAACTGTATTTAAATACTATTAACAACAATAAAATATTGAAGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ORF
ATGATTCTCCTCATTTGGGCCATAGTGCTCATTGCCGCCTTCGTGCTGTTTTACAAACAAGCCTATTCTTTGTTCAGCAAGCACGGAGTGAAGGGCTTCACTCCGCTACCTTTCTTTGGCAACATGGGGCGTATTGTAATAAAAATGGATCATTTCTCGGACCATATACAAAGTTTATACGATTCATTCCCTGAGGAAAGATTCGTCGGAAGATACGAATTTCTCAACCCAATGGTTATAATTCGTGACATTGAGTTACTGAAGAAAATCACGGTTAAGGACTTCGAGCATTTCCTGGACCATCGGACTATCATCAACAAGGACACCGACCCGTTCTTCGGAAGGAGCTTGTTCTTCTTGAGAGATCAAGACTGGAAAGACATGCGCTCAACGCTTTCACCGGCGTTCACCAGCTCCAAAATGAAGCTCATGATGCCATTCATCGTTGAAGTGGGACAACAGATGAATAAAGCGCTAAAGCAGAGGATACAAGAAGCAGGGGTTGGCTACGTGGACATCGACTCCAAAGACCTGACCACTAGATACGCCAACGATGTGATCGCGTCCTGCGCCTTCGGTCTGAAGGTCGACTCCATCACCGAGGAGAACAACCAGTTCTACGCGATGGGGAAAGCCGCTTCTACTTTCAACTTCAGGCAGCTTCTCATTTTCTTTGGTCTTGCATCGGTCCCGAAGCTTGTGAAGATTCTACGCATTACGCTGTTTCAAAAAGAAATCAAAACCTTCTTCAGGGAACTGATCTTGGGCACCATGAAGAACAGGGAAGCACAAAACATTATCAGACCTGACATGATCCATCTACTCATGGAAGCTAAGAAAGGCAAGTTGAGGCACGATGAGAAATCCACAAAAGACAGCGACGCTGGCTTTGCTACCGTGGAAGAGTCCTCAGTCGGCAAAAAGGATATTAACCGAGTGTGGACTGACGATGACTTGGTCGCCCAAGCGGTTCTGTTTTTCGTCGCCGGCTTCGAAACAGTATCGTCAGCGATGACATTCCTGCTTCACGAGTTGGCTTTGAACCCTGAAGTGCAGGAGAAGCTGGTGGAAGAAATCCAAGAAAACGAGAAAAACAACAACGGCAAATTCGACTACAACTCCATTCAGAACATGGTGTATTTAGATATGGTGGTGTCAGAGGTCTTAAGATTGTGGCCACCCGTTATTGCCTTAGATAGAATCTGCGTTAAAGACTACAACTTGGGTAAACCAAATGACAAAAGCAAAGAAGATTTTATTATACGCAAAGATGTGGCGGTGGGTATACCAGTATGGGGCTTACATCGAGATCCCGAATTCTTCCCGAACCCCCTGAAATTCGATCCCGAAAGGTTCTCAGAGGAGAACAAACACAACATCAAACCCTTCAGTTACATGCCATTTGGTCTGGGACCTAGGAATTGTATAGGTTCAAGGTTCGCTTTGTGCGAAGTCAAGGTGATGACATACCAACTCCTCCAGCACATGGAGATATCTCCGTGCGAGAAGACCTGCATTCCCTCGAAACTCAGCAAGGAGACTTTCAACCTTCGCCTTGAAGGCGGTCATTGGATCAGGCTGAAGATTAGAAATTGA
Protein
MILLIWAIVLIAAFVLFYKQAYSLFSKHGVKGFTPLPFFGNMGRIVIKMDHFSDHIQSLYDSFPEERFVGRYEFLNPMVIIRDIELLKKITVKDFEHFLDHRTIINKDTDPFFGRSLFFLRDQDWKDMRSTLSPAFTSSKMKLMMPFIVEVGQQMNKALKQRIQEAGVGYVDIDSKDLTTRYANDVIASCAFGLKVDSITEENNQFYAMGKAASTFNFRQLLIFFGLASVPKLVKILRITLFQKEIKTFFRELILGTMKNREAQNIIRPDMIHLLMEAKKGKLRHDEKSTKDSDAGFATVEESSVGKKDINRVWTDDDLVAQAVLFFVAGFETVSSAMTFLLHELALNPEVQEKLVEEIQENEKNNNGKFDYNSIQNMVYLDMVVSEVLRLWPPVIALDRICVKDYNLGKPNDKSKEDFIIRKDVAVGIPVWGLHRDPEFFPNPLKFDPERFSEENKHNIKPFSYMPFGLGPRNCIGSRFALCEVKVMTYQLLQHMEISPCEKTCIPSKLSKETFNLRLEGGHWIRLKIRN*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13974.1 | YebO-like protein | |
| Pfam/Hmmer3 | PF13387.1 | Domain of unknown function (DUF4105) | |
| Pfam/Hmmer3 | PF00067.17 | Cytochrome P450 | |
| BLASTP/NCBI-nr | NP_001077079 | cytochrome P450 9a20 [Bombyx mori] gb|ABO07439.1| cytochrome P450 [Bombyx mori] | 0.0 |
| InterPro | IPR001128 | Cyt_P450 | |
| InterPro | IPR017972 | Cyt_P450_CS | |
| InterPro | IPR002401 | Cyt_P450_E_grp-I | |
| Gene Ontology(MF) | GO:0009055 | electron carrier activity | |
| Gene Ontology(MF) | GO:0020037 | heme binding | |
| Gene Ontology(MF) | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | |
| Gene Ontology(MF) | GO:0005506 | iron ion binding | |
| Gene Ontology(BP) | GO:0055114 | oxidation-reduction process |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|---|---|---|
| Gene10371 | BMgn003943 | chr17 | 17549318 | 17561182 | Bm_scaf105 | 350004 | 361868 | - |
| Gene10357 | BMgn003926 | chr17 | 16620914 | 16629890 | Bm_scaf114 | 899932 | 908908 | + |
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS202077 | DPSCF300116 | 460511 | 464244 | - |
| D. plexippus | DPOGS201160 | DPSCF300065 | 539853 | 551370 | + |
| H. melpomene | HMEL012008 | HE671249 | 4486 | 10545 | + |
| H. melpomene | HMEL013739 | HE671384 | 177227 | 191055 | - |
| H. melpomene | HMEL013741 | HE671384 | 196327 | 203153 | - |
| H. melpomene | HMEL013737 | HE671384 | 159394 | 167933 | + |
| H. melpomene | HMEL013742 | HE671384 | 205630 | 212225 | + |
| H. melpomene | HMEL013738 | HE671384 | 168863 | 176210 | - |
| H. melpomene | HMEL013738 | HE671384 | 168863 | 176210 | - |
| H. melpomene | HMEL005629 | HE670164 | 8130 | 15885 | - |
| M. sexta | Msex013400-RA | scaffold00502 | 123320 | 153192 | + |
| M. sexta | Msex013401-RA | scaffold00502 | 147838 | 163890 | - |
| M. sexta | Msex013394-RA | scaffold00502 | 14671 | 40271 | - |
| M. sexta | Msex012630-RA | scaffold00410 | 1073 | 35444 | + |
| P. xylostella | Px003485.1 | scaffold_154 | 219752 | 226769 | + |
| P. xylostella | Px013884.1 | scaffold_59 | 1388529 | 1396016 | + |
| P. xylostella | Px014982.1 | scaffold_68 | 534795 | 540844 | - |
| P. xylostella | Px014978.1 | scaffold_68 | 366776 | 371019 | - |
| P. xylostella | Px014981.1 | scaffold_68 | 524542 | 532510 | - |