KAIKObase gene description page [BMgn004616/Gene15370]
Outline
| Official gene ID | BMgn004616 |
|---|---|
| Local gene ID | Gene15370 |
| Chromosome | chr27 |
| Start (Chr.) | 12347195 |
| End (Chr.) | 12363658 |
| Scaffold | Bm_scaf128 |
| Start (Scaf.) | 382413 |
| End (Scaf.) | 398876 |
| Direction | - |
Member sequences
| ID | Type | Representative |
|---|---|---|
| BGIBMGA004616 | predicted gene | Yes |
Representative sequence
Nucleotide
ATGCCGGCCATTTTGTCGAAAATTCGCGAACAAGCAACGCGGGTGCAACCCTCGCTCGCACTCGGCGTGGGCGTAGGGGTGGCGCTAGCCGCGTGCGCCGTTTATTCAACAAGAGACAAGAAACAAGCCCCACCATGCAACAATAACAATAATTATAAGATCTTGAAGAACGGTAATATTCACACGGAAGATAATGTCAAGACGAACGAAACTTGTGGGGGGAGGTGCGGGGCGGAGCAGTGCGCCCTCTGCAGGGGGGAAGTCGACACCGACAACAAACAGAATATCGAAGACGCCGACGAAACCCAATCAATCGAGGAGCACGTCCCGGGTCTCAACCTCGAATTCCTCAGGCAGCTGATCTCACTCGCGAGGATCATGGTCCCAGGGTTCAGGAGCCACGAAGTAGCTCTACTTACAGCTCATACTCTATGCTTATTTTCGAGGACCTTTCTATCGATCTACGTCGCTTCCTTGGAAGGGTCCATTGTGAAGCACATAGTCCAAAAAGACATGCGCAGTTTCTCGTCGTTGCTGATGCAGTGGTTCGGCATTGCCATACCGGCTACCTTCATCAACTCCATGATCAGATACCTCGAGAGTCGATTGGCCCTGGCCTTCAGAACCAGACTGGTCAATCACGCTTACGAGCTGTACTTTAAAAACCAGACCTACTATAGGGTCGCTAACTTGGACGCTAGGATCGAAAACGCTGATCACAGGTTGACGGAAGATGTCTCCGTGTTCACGCAGTCCGTGGCGCATCTCTACAGTTCGCTCACAAAACCTTGCTTCGACTTGCTGCTGATTGTCCTCACTCTGGCTTCGTACTCCAACAAGATGAAAGGAAACATATTCATTGGTCCCGGGATAGCAACGGTGGTGATATGCGCGACCGGACAAGTCCTTCGTATGCTCAGTCCGAGGTTCGGTGCTTTGGCCGGGGAGGAGGCGAGGATGCGCGCTAACCTGCGCCATGTCCACGCCAGTCTCATCGCGCACGCTGAAGAAGTCGCCTTCTACGGAGGGCATAAGGTGGAACTAGGACAGCTGCAGTCCGCGTACAAACAGCTGGTCGCGCAAATGACTTCGGTGTTCAACAAGAAACTGTGGTACGTGATGCTGGAGCAATTCTGCATGAAGTATCTGTGGTCCGGCACCGGAATGGTCATGCTGGCGCTGCCCATACTCACGGGGACTAAGGAAGGAGGTGAAAGCAACAGCATCAGCGCGAGAACAGAATACATGACCACGTCCAGGAACCTGCTGAATTCGGCTGCGGACGCCATCGAGAGGCTCATGTCCAGTTATAAGGAGGTGGTGACGCTGGCGGGGTACGCCACGCGCGTGTCCGACATGCTGCTGGTGTTCGGCGAGGTGGCGCGCGGCCGCTGCGTGCGCGCCGTGCACGTGGCGCCGCCGCACCAAGCCTTCCAGGTCACCTTCCGGGACAACCAGCCCGTGCCGCAAGGCAAAGTAATGTACACGGACGACTTGTCGATAAAGCTTCGCAACGTGCCGATAGTGACCCCGGCCTGCGACGTGGTGGCCGCCGGCGTGACCCTGGACATCGCGCCGGGGACGCACCTCCTCATCGTTGGACCCAACGGATGTGGGAAGTCCAGCTTATTCCGAATAATCTCCGGTCTGTGGCCGGTGTTCGGCGGCGAGCTGTCGGTGCCGCGGCCCTGCGCGTGCGGCCACTGCGCCGACGAGACCAACACCAGCGACGCCTGCGCCTCGCGCCCCATCATGTTCTACATACCGCAAAGACCGTACATGTCGGCGGGCTCGCTGCTGGACCAGGTGACGTACCCGTCGCGCGCGGCGCCGGACGACGCGGCGGCGGAGGAGCGCGCGCGGCGCATCCTGCGCGCGGTGCGGCTGCACGCGGCGGCGGCGCGGCTGGGCGGGCTGCGGGCCGTGCGCGACTGGCGCGCCACGCTCTCCGGCGGCGAGAAGCAGCGCCTCGCCATGGCCAGGATGTTCTACCACAGGCCGGTGTACGCTCTGCTGGACGAGTGCACGAGTGCCGTTTCCATGGAGACGGAGGTCGTCATGTATGAGGAGGCTGTCAAGGAGGGCATCACGCTACTCTCAATCACGCACCGACCGAGCGTGTGGAAGTACCACACGCACGTTTTGGAGTTCGACGGCGCCGGCAACTGGTCGTTCCGGAAGCTGGACAAGGAGAGCGCGGTCTCCAGCCCCGCCATCAACAGCGCCGCGACCAGCACGCCAGCGGAGCCCCCCGCCGAACACTAG
ORF
Protein
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13555.1 | P-loop containing region of AAA domain | |
| Pfam/Hmmer3 | PF07728.9 | AAA domain (dynein-related subfamily) | |
| Pfam/Hmmer3 | PF02463.14 | RecF/RecN/SMC N terminal domain | |
| Pfam/Hmmer3 | PF01078.16 | Magnesium chelatase, subunit ChlI | |
| Pfam/Hmmer3 | PF00005.22 | ABC transporter | |
| Pfam/Hmmer3 | PF13476.1 | AAA domain | |
| Pfam/Hmmer3 | PF05992.7 | SbmA/BacA-like family | |
| Pfam/Hmmer3 | PF00488.16 | MutS domain V | |
| Pfam/Hmmer3 | PF06472.10 | ABC transporter transmembrane region 2 | |
| Pfam/Hmmer3 | PF13191.1 | AAA ATPase domain | |
| Pfam/Hmmer3 | PF13304.1 | AAA domain | |
| BLASTP/NCBI-nr | ACY70493 | hypothetical protein DVIR88_6g0030 [Drosophila virilis] | 0.0 |
| InterPro | IPR003593 | AAA+_ATPase | |
| InterPro | IPR010509 | ABC_Ald_N | |
| InterPro | IPR003439 | ABC_transporter-like | |
| InterPro | IPR011527 | ABC_transptrTM_dom_typ1 | |
| InterPro | IPR017940 | ABC_transporter_type1 | |
| InterPro | IPR017871 | ABC_transporter_CS | |
| Gene Ontology(CC) | GO:0016020 | membrane | |
| Gene Ontology(BP) | GO:0006810 | transport | |
| Gene Ontology(BP) | GO:0055085 | transmembrane transport | |
| Gene Ontology(MF) | GO:0005524 | ATP binding | |
| Gene Ontology(MF) | GO:0042626 | ATPase activity, coupled to transmembrane movement of substances | |
| Gene Ontology(MF) | GO:0000166 | nucleotide binding | |
| Gene Ontology(MF) | GO:0017111 | nucleoside-triphosphatase activity | |
| Gene Ontology(CC) | GO:0016021 | integral to membrane | |
| Gene Ontology(MF) | GO:0016887 | ATPase activity |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS213906 | DPSCF300218 | 176732 | 182967 | - |
| H. melpomene | HMEL006069 | HE670355 | 374926 | 388690 | + |
| M. sexta | Msex006098-RA | scaffold00106 | 853282 | 923939 | + |
| P. xylostella | Px010231.1 | scaffold_372 | 135778 | 153573 | - |