KAIKObase gene description page [BMgn005094/Gene14713]
Outline
| Official gene ID | BMgn005094 |
|---|---|
| Local gene ID | Gene14713 |
| Chromosome | chr25 |
| Start (Chr.) | 12653237 |
| End (Chr.) | 12662933 |
| Scaffold | Bm_scaf32 |
| Start (Scaf.) | 124909 |
| End (Scaf.) | 134605 |
| Direction | - |
Member sequences
| ID | Type | Representative |
|---|---|---|
| BGIBMGA005094 | predicted gene | Yes |
Representative sequence
Nucleotide
ATGACGCCCGGCCTGAAAATGGAATCGAAAGGCACCCAGATACACTTACCGCTGATGGGGCGTGGGAGCAGAGGCGAGCTCAATGATAAAGTCACGTTCTCCCAGGGCAAAACCTTCACGGAGCAGCTCAATAATGGCCAAGTACTTGGTGGCTCCCAAATGAACCTATGCAATGGCGCTGCGGGTGCAGCAGGAATCACAACTCTCGTTCCCAAGATCCCAAATGGCTATGGAGATCAGAAAAAACCAATGGCGACTCTCACACACCTGCCAAAAAGACCTCCAGTGGACATAGAGTTCTCTGATTTATCCTATTCAGTCAGCGAGGGCAGGAAGAGAGGTTACAAGTCCTTGCTTAAATGTATCAATGGTACCTTTCGATCAGGGGAGCTGACAGCCATTATGGGACCTTCGGGGGCAGGGAAGAGCACACTCATGAACATTCTAGCCGGATATAAAACATCAAACGTCAGCGGATCAATCCTGATAAACGGAAAAGAAAGAAATTTGAGAAGATTCAGAAAACTATCCTGTTATATAATGCAGGATGACTGCCTTCTACCACATTTGACGGTCCGGGAGGCGATGTATGTATCAGCTAACCTGAAACTAGGGAAGGACATGACAGCTACAACAAAGAAGATAGTCATCGATGAAATATTAGAAATGCTCGGTCTTATCGAGGCCGGTGATACTAGGACCATAAATCTATCAGGAGGACAGAAAAAAAGACTATCAATAGCCTTGGAGCTAGTTAACAATCCACCGGTAATGTTCTTTGATGAACCAACTTCTGGATTGGATAGTTCCTCGTGTTTCCAATGCATATCATTATTAAAATCTTTGGCTAGAGGCGGCAGGACGATAATCTGTACTATCCATCAACCGTCTGCCCGATTATTTGAGATGTTTGACTTTTTATACACGTTGACCGATGGGCAGTGTATCTACCAAGGGAAGGTCACGGGTCTCGTGCCATTTTTGTCGTCGATGGGGCTCCACTGCCCAAGCTACCATAACCCTGCTGATTATTTAATGGAGGTAGCAAGCGGTGAACACGGAAACTGCGGACGGGGACAGTCTTCTTCCACATCATCATCATCATCGTCCGTGCCTCAGAATGTAAATTACAATAATCAACCGAATAAAAATAATACTCAGAAAGAAGCTCTTTCTATAGTTGTTGACAAACCAACGTGTACTGTGATAGACATGTCAGAACCGGTACTCAATACCGAAAAGCAGAACATTCCAAACTCTACGAACCTCGCTCCTGTAACCTGCACCACTTCACTATTAGACTCCAGCGAGAGTTTCACAAAGAAGCCAGTTAAAACCGGTTTCCCGACGTCAGGGTGGAAGCAATTTTGGATCTTATTGAAGCGAACCTTCCGAAGTATTCTTAGAGACCAGACATTGACGCATTTAAGACTATGTTCGCATACGATCGTGGGATTGTTGATTGGCTTCCTCTATTACGATATAGGGAACGATGCCGCCAAAGTGATGAGCAATGCTGGATGCATTTTTTTTACCGTGATGTTCACCATGTTTACTGCCATGATGCCTACCATACTCACATTCCCGACAGAGATGAGCGTATTCGTGAGAGAACATTTAAATTACTGGTATTCGTTGAAGGCTTTCTATTTCGCAAAAACAATGGCAGATCTACCATTTCAGATAATATTCAGTGGCGTCTACGTGATCATAGTGTACTTCATGACGGGCCAGCCGATGCAGACCGATCGAGTGCTGATGTTCACGACCATCAACATACTCACGGCGCTAGTCTCCCAGTCTCTAGGACTTCTCATCGGTGCCGCCATGAAGATCGAGACTGGGGTGTACCTGGGACCGGTCACGACAATACCCGTCGTCTTATTCTCCGGTTTCTTCGTGAACTTCAACGCAATACCAAACTACCTTCGATGGCTGACGTACTTAAGCTATGTTAGATATGGCTTCGAAGGAGCCATGCTGTCGGTTTACGGGTTCGGAAGGGAGAAGCTGTATTGTTCGGAAGCATACTGCCATTTCCGGAACCCAGATCTCTTCTTGAAGGAAATGACGATGGATAAATCGAACTTTTGGATCGACGTTGGAGCTTTAAGCGCTCTGTTCGTCTTCATAAGAGTAATCTCATATTTAGTTCTAAGGTTTAAGTTGAAGATGATGCAATAA
ORF
Protein
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13558.1 | Putative exonuclease SbcCD, C subunit | |
| Pfam/Hmmer3 | PF13207.1 | AAA domain | |
| Pfam/Hmmer3 | PF13481.1 | AAA domain | |
| Pfam/Hmmer3 | PF12846.2 | AAA-like domain | |
| Pfam/Hmmer3 | PF01061.19 | ABC-2 type transporter | |
| Pfam/Hmmer3 | PF13245.1 | Part of AAA domain | |
| Pfam/Hmmer3 | PF13191.1 | AAA ATPase domain | |
| Pfam/Hmmer3 | PF13401.1 | AAA domain | |
| Pfam/Hmmer3 | PF13604.1 | AAA domain | |
| Pfam/Hmmer3 | PF13521.1 | AAA domain | |
| Pfam/Hmmer3 | PF13555.1 | P-loop containing region of AAA domain | |
| Pfam/Hmmer3 | PF01926.18 | 50S ribosome-binding GTPase | |
| Pfam/Hmmer3 | PF00005.22 | ABC transporter | |
| Pfam/Hmmer3 | PF13166.1 | AAA domain | |
| Pfam/Hmmer3 | PF13476.1 | AAA domain | |
| Pfam/Hmmer3 | PF13173.1 | AAA domain | |
| Pfam/Hmmer3 | PF01312.14 | FlhB HrpN YscU SpaS Family | |
| Pfam/Hmmer3 | PF03193.11 | Protein of unknown function, DUF258 | |
| Pfam/Hmmer3 | PF13304.1 | AAA domain | |
| BLASTP/NCBI-nr | EHJ64497 | putative white family ATP-binding cassette transporter [Danaus plexippus] | 0.0 |
| InterPro | IPR020064 | ABC_transptr_G1-like | |
| InterPro | IPR003593 | AAA+_ATPase | |
| InterPro | IPR003439 | ABC_transporter-like | |
| InterPro | IPR013525 | ABC_2_trans | |
| InterPro | IPR017871 | ABC_transporter_CS | |
| Gene Ontology(CC) | GO:0016020 | membrane | |
| Gene Ontology(MF) | GO:0005524 | ATP binding | |
| Gene Ontology(MF) | GO:0000166 | nucleotide binding | |
| Gene Ontology(CC) | GO:0016021 | integral to membrane | |
| Gene Ontology(MF) | GO:0017111 | nucleoside-triphosphatase activity | |
| Gene Ontology(MF) | GO:0016887 | ATPase activity |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|---|---|---|
| Gene07372 | BMgn005201 | chr12 | 16017752 | 16065301 | Bm_scaf119 | 73498 | 121047 | - |
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS204358 | DPSCF300040 | 451153 | 462194 | - |
| D. plexippus | DPOGS212638 | DPSCF300245 | 477442 | 501425 | + |
| H. melpomene | HMEL014574 | HE671458 | 680 | 15869 | + |
| H. melpomene | HMEL005297 | HE669998 | 69006 | 75704 | + |
| M. sexta | Msex003497-RA | scaffold00046 | 145168 | 189402 | - |
| M. sexta | Msex003330-RA | scaffold00043 | 795496 | 838720 | + |
| P. xylostella | Px016677.1 | scaffold_82 | 593974 | 605475 | - |
| P. xylostella | Px017858.1 | scaffold_97 | 716767 | 726144 | + |