KAIKObase gene description page [BMgn009000/Gene01417]
Outline
| Official gene ID | BMgn009000 |
|---|---|
| Local gene ID | Gene01417 |
| Chromosome | chr3 |
| Start (Chr.) | 10064128 |
| End (Chr.) | 10084068 |
| Scaffold | Bm_scaf17 |
| Start (Scaf.) | 3332246 |
| End (Scaf.) | 3352186 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| AK382836 | full-length cDNA | Yes |
| AK381318 | full-length cDNA | No |
| BGIBMGA009000 | predicted gene | No |
Representative sequence
Nucleotide
GATGATTTTGACAAAACGAATTGGAGGGTTAGGTGGATGTAAAATTCTATTTTCTAAATTAAAAATACTGTACTCTGGGTGCGGACAGAGAGTTCCATCATGAGTGCATTAATGAAAGCGGCAGTTTCCCGCAGTCCTGCGTCACTGGCATCATACTTATATAGAAATATTCACGTGGCTGCTTCTGGTGCTACTTCTAAAGATGCTTCAGTTACAACAAATATGACTAAAGCATACACAGTAATTGACCACAAACATGATGCATTAGTTATTGGGGCTGGTGGAGCAGGACTTCGAGCAGCCTTTGGTCTTGTCCAAGAAGGATTTAAAACTGCTGTCGTAACTAAGTTGTTCCCTACAAGATCACATACTGTTGCTGCACAGGGTGGAATTAATGCTGCTTTGGGAAACATGGAGGAAGACAGTTGGCTCTGGCATATGTATGACACAGTTAAAGGTTCCGACTGGCTTGGAGATCAGGATGCCATTCACTACATGACTAAAGAAGCGCCTCATGCAGTAATCGAACTGGACAACTACGGAATGCCATTCTCCCGCACCCCGGAGGGTAAGATTTACCAGAGAGCCTTCGGAGGACAGTCTCTCAAGTTCGGAAAGGGAGGACAAGCTCATAGATGCTGCGCCGTAGCTGACAGAACCGGGCACTCCCTCCTTCACACGCTGTACGGGCAATCACTCCGCTACGACTGCGAATACTTCATCGAGTACTTCGCTCTCGATTTGCTAATGGAAGACGGAGTCTGCAAGGGATGCATCGCCATCAATCTCGAAGACGGAACACTGCACAGGTTCCAAGCGAAGAACACGATCTTGGCGACGGGAGGCACCGGTCGCTCATACTTCAGTTGCACGTCGGCGCACACCTGCACAGGCGACGGCACCGCCATGGCCGCCCGAGCCGGTCTGCAGAACGAGGATATGGAGTTTGTGCAGTTCCATCCAACTGGTATCTACGGCGCCGGTTGCCTGATGACCGAGGGTTGTCGCGGCGAGGGCGGCTTCCTCGTCAACTCGAAGGGCGAACGGTTCATGGAACGTTACGCGCCCGTCGCCAAGGACCTGGCCAGTCGAGACGTGGTCTCGCGTGCTATGACGGTTGAAATTATGGAAGGTCGCGGCTGCGGCCCGGAGAAGGACCACGTTCACCTACAGTTGCACCACCTGCCTCCCGAACAACTGAAGCAGCGTCTGCCCGGCATCTCGGAGACGGCCATGATCTTCGCAGGGGTCGACGTCACTAAGGAACCCATTCCTGTGCTACCGACAGTGCACTATAATATGGGTGGTACTCCCACCAATTTCCGCGGGGAGGTGATCACGCACCGTGGCGGCGCGGACCGCGTGGTGCCGGGGTTGCTGGCGGCGGGCGAGGCGTCGTGCGCCAGCGTGCACGGCGCCAACCGGCTGGGCGCCAACTCGCTGCTCGACATCGTGGTGTTCGGCCGCGCCTGCGCACTCACCGTGGCCGACACGGCGCGCCCCGGGGACCCGCAGCCGCCGCTCGCGCCCACAACGGGCGAGGCGAGCATTGCCAACTTGGACAGCATCAGATACGCCAATGGTTCAATCTCTACAGCCGACCTTAGACTTAGAATGCAAAAATGCATGCAGAAGAATGCCGCCGTCTTTAGACAGAAGAGCACCTTGGAGGAAGGTCAACGTCAAATTCACGAGATCTACAAGCAGATTAAAGACGTGAAGGTGTCCGACCGGTCGTTGATCTGGAACAGTGATCTAGTGGAGACGCTGGAGCTTCAGAACCTTCTCATCAACTCGGTACAGATCGTGGAAGGAGCACTGGCGCGGGAGGAGTCGCGCGGAGCCCACGCCCGAGAGGACTTCAAGACCAGACGCGACGAGTACGACTACTCTAAACCTCTCGAGGGACAGAGTAAGTTGCCGTTCGAGCAGCACTGGAGGAAGCACACGCTCGCCGAGACCGACCCCGCGACCGGCGACACGCGCCTCACCTACCGCCCCGTCATCGACCGCACGCTCGACGCCGCCGAGTGCAGCACCGTGCCGCCCGTCATCCGCACCTACTAGCCGCCGCCAACACCACGAGGCTACATTGAAACATTTTTGAAGGTGAATGACCAACGCGAGACCAACACAGCCCGACGTGCGGCGCCCGCCCGATACTTCTTTAGTGTTCAAACGAAACGCCACTGTTTAGTATAAATGTTATGTTAACATTAATAATTTATTTTTTATTTAAGATTTAAGTTTCACTAGTTCAATCTCTGAAATGTAAAATTTTTAATCTAAACTATAATAACATTGAAAATAATTATGTACAAATGAAACAGTGCCAGATACTCAATAGTGTGCCAGAAATATCTAAATACGAACGTGTATCATGAGAGTACACCAGCAGACTATAATTCATGTAAACTATAAACCGTTAAGACGGAATGCGGCATTTATTGTGGTTTTTAAACGTTGTACAAATTATTACAGCAGCATATCTATCTTAAGTACTTAAAGAAACAATAAAGAAATCTGTATCATCTAAGATAATAATAATATGACAATACATGTTACTTTAAAATTTTAACGACATTATTGAATAGTTACATAGTTGTGTAAGTTTTTACTCAGGAAATAACGAAAATATTCACTGGTGTTTGTTCCTTTTATAATCTAAATCCCATAAAAATCAGTTTGTAACAAAGCCAGGGTTGGAGCTTGTCCAGTTAAGCTTTTCGACGCTTACAGATGTGTAAAATGTTCATGCGCTAATTTTATTTTGTAAATTTTGAATATCGTTTCTCAGTATTATTTATAGATTATATATATATTTGAAATGTACATACCCGCAACATTATATGAATCAGAAATAAATGTGATGTAACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ORF
ATGAGTGCATTAATGAAAGCGGCAGTTTCCCGCAGTCCTGCGTCACTGGCATCATACTTATATAGAAATATTCACGTGGCTGCTTCTGGTGCTACTTCTAAAGATGCTTCAGTTACAACAAATATGACTAAAGCATACACAGTAATTGACCACAAACATGATGCATTAGTTATTGGGGCTGGTGGAGCAGGACTTCGAGCAGCCTTTGGTCTTGTCCAAGAAGGATTTAAAACTGCTGTCGTAACTAAGTTGTTCCCTACAAGATCACATACTGTTGCTGCACAGGGTGGAATTAATGCTGCTTTGGGAAACATGGAGGAAGACAGTTGGCTCTGGCATATGTATGACACAGTTAAAGGTTCCGACTGGCTTGGAGATCAGGATGCCATTCACTACATGACTAAAGAAGCGCCTCATGCAGTAATCGAACTGGACAACTACGGAATGCCATTCTCCCGCACCCCGGAGGGTAAGATTTACCAGAGAGCCTTCGGAGGACAGTCTCTCAAGTTCGGAAAGGGAGGACAAGCTCATAGATGCTGCGCCGTAGCTGACAGAACCGGGCACTCCCTCCTTCACACGCTGTACGGGCAATCACTCCGCTACGACTGCGAATACTTCATCGAGTACTTCGCTCTCGATTTGCTAATGGAAGACGGAGTCTGCAAGGGATGCATCGCCATCAATCTCGAAGACGGAACACTGCACAGGTTCCAAGCGAAGAACACGATCTTGGCGACGGGAGGCACCGGTCGCTCATACTTCAGTTGCACGTCGGCGCACACCTGCACAGGCGACGGCACCGCCATGGCCGCCCGAGCCGGTCTGCAGAACGAGGATATGGAGTTTGTGCAGTTCCATCCAACTGGTATCTACGGCGCCGGTTGCCTGATGACCGAGGGTTGTCGCGGCGAGGGCGGCTTCCTCGTCAACTCGAAGGGCGAACGGTTCATGGAACGTTACGCGCCCGTCGCCAAGGACCTGGCCAGTCGAGACGTGGTCTCGCGTGCTATGACGGTTGAAATTATGGAAGGTCGCGGCTGCGGCCCGGAGAAGGACCACGTTCACCTACAGTTGCACCACCTGCCTCCCGAACAACTGAAGCAGCGTCTGCCCGGCATCTCGGAGACGGCCATGATCTTCGCAGGGGTCGACGTCACTAAGGAACCCATTCCTGTGCTACCGACAGTGCACTATAATATGGGTGGTACTCCCACCAATTTCCGCGGGGAGGTGATCACGCACCGTGGCGGCGCGGACCGCGTGGTGCCGGGGTTGCTGGCGGCGGGCGAGGCGTCGTGCGCCAGCGTGCACGGCGCCAACCGGCTGGGCGCCAACTCGCTGCTCGACATCGTGGTGTTCGGCCGCGCCTGCGCACTCACCGTGGCCGACACGGCGCGCCCCGGGGACCCGCAGCCGCCGCTCGCGCCCACAACGGGCGAGGCGAGCATTGCCAACTTGGACAGCATCAGATACGCCAATGGTTCAATCTCTACAGCCGACCTTAGACTTAGAATGCAAAAATGCATGCAGAAGAATGCCGCCGTCTTTAGACAGAAGAGCACCTTGGAGGAAGGTCAACGTCAAATTCACGAGATCTACAAGCAGATTAAAGACGTGAAGGTGTCCGACCGGTCGTTGATCTGGAACAGTGATCTAGTGGAGACGCTGGAGCTTCAGAACCTTCTCATCAACTCGGTACAGATCGTGGAAGGAGCACTGGCGCGGGAGGAGTCGCGCGGAGCCCACGCCCGAGAGGACTTCAAGACCAGACGCGACGAGTACGACTACTCTAAACCTCTCGAGGGACAGAGTAAGTTGCCGTTCGAGCAGCACTGGAGGAAGCACACGCTCGCCGAGACCGACCCCGCGACCGGCGACACGCGCCTCACCTACCGCCCCGTCATCGACCGCACGCTCGACGCCGCCGAGTGCAGCACCGTGCCGCCCGTCATCCGCACCTACTAG
Protein
MSALMKAAVSRSPASLASYLYRNIHVAASGATSKDASVTTNMTKAYTVIDHKHDALVIGAGGAGLRAAFGLVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNYGMPFSRTPEGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCEYFIEYFALDLLMEDGVCKGCIAINLEDGTLHRFQAKNTILATGGTGRSYFSCTSAHTCTGDGTAMAARAGLQNEDMEFVQFHPTGIYGAGCLMTEGCRGEGGFLVNSKGERFMERYAPVAKDLASRDVVSRAMTVEIMEGRGCGPEKDHVHLQLHHLPPEQLKQRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGTPTNFRGEVITHRGGADRVVPGLLAAGEASCASVHGANRLGANSLLDIVVFGRACALTVADTARPGDPQPPLAPTTGEASIANLDSIRYANGSISTADLRLRMQKCMQKNAAVFRQKSTLEEGQRQIHEIYKQIKDVKVSDRSLIWNSDLVETLELQNLLINSVQIVEGALAREESRGAHAREDFKTRRDEYDYSKPLEGQSKLPFEQHWRKHTLAETDPATGDTRLTYRPVIDRTLDAAECSTVPPVIRTY*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF01266.19 | FAD dependent oxidoreductase | |
| Pfam/Hmmer3 | PF01494.14 | FAD binding domain | |
| Pfam/Hmmer3 | PF07992.9 | Pyridine nucleotide-disulphide oxidoreductase | |
| Pfam/Hmmer3 | PF01134.17 | Glucose inhibited division protein A | |
| Pfam/Hmmer3 | PF00890.19 | FAD binding domain | |
| Pfam/Hmmer3 | PF03486.9 | HI0933-like protein | |
| Pfam/Hmmer3 | PF02910.15 | Fumarate reductase flavoprotein C-term | |
| Pfam/Hmmer3 | PF01946.12 | Thi4 family | |
| BLASTP/NCBI-nr | EHJ75844 | hypothetical protein KGM_04050 [Danaus plexippus] | 0.0 |
| InterPro | IPR011281 | Succ_DH_flav_su_fwd | |
| InterPro | IPR003952 | FRD_SDH_FAD_BS | |
| InterPro | IPR015939 | Fum_Rdtase/Succ_DH_flav-like_C | |
| InterPro | IPR003953 | FAD_bind_dom | |
| InterPro | IPR014006 | Succ_Dhase_FrdA_Gneg | |
| Gene Ontology(BP) | GO:0006099 | tricarboxylic acid cycle | |
| Gene Ontology(MF) | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | |
| Gene Ontology(BP) | GO:0022900 | electron transport chain | |
| Gene Ontology(MF) | GO:0050660 | flavin adenine dinucleotide binding | |
| Gene Ontology(BP) | GO:0055114 | oxidation-reduction process | |
| Gene Ontology(MF) | GO:0016491 | oxidoreductase activity |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|---|---|---|
| Gene00669 | BMgn012226 | chr1 | 19330110 | 19348848 | Bm_scaf26 | 4265554 | 4284292 | - |
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS200427 | DPSCF300236 | 43770 | 52300 | - |
| D. plexippus | DPOGS203282 | DPSCF300003 | 1697174 | 1703624 | - |
| H. melpomene | HMEL002503 | HE668129 | 250363 | 260412 | + |
| M. sexta | Msex001774-RA | scaffold00022 | 1687685 | 1711238 | - |
| M. sexta | Msex002017-RA | scaffold00023 | 53173 | 73668 | + |
| P. xylostella | Px006554.1 | scaffold_23 | 1449879 | 1462462 | + |