KAIKObase gene description page [BMgn009106/Gene01573]
Outline
| Official gene ID | BMgn009106 |
|---|---|
| Local gene ID | Gene01573 |
| Chromosome | chr3 |
| Start (Chr.) | 14628874 |
| End (Chr.) | 14633775 |
| Scaffold | Bm_scaf63 |
| Start (Scaf.) | 1440871 |
| End (Scaf.) | 1445772 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| NM_001043612.1 | publicly available mRNA | No |
| AK383502 | full-length cDNA | Yes |
| AK378957 | full-length cDNA | No |
| BGIBMGA009106 | predicted gene | No |
Representative sequence
Nucleotide
GAGTTTTGCTTCAGCAATAGAACCGAGTGCCCGGCGACTTACCACTATAAATTGAAAATGCCTAAGGTTGTGTACCATTACTTCGCTTGCAAGGCTCTCGGGGAGAGCGGCCGTATGCTGCTCGCCTACGGAGGCCAGGACTTCGAAGACCACCGCGTGCTCTCCGCTGACTGGCCTGACTTCAAGCCAAAGACTCCGTTCGGTCAGATGCCAGTATTAGTGATCGACGGCAAGCAGTACGCTCAGAGCACCGCCATCTGCAGGTACCTCGGCCGCAAGTACGGGCTCGCCGGGGCCAATGACGAGGAGGCCTTCGAGATCGACCAGAACGTGGAGTTCCTGCACGATATTCGCGCCAAAGCGGCCGCTGTATACTACGAAGCTGATGAGGAGTTAAAAGCAAAAAAACACGAGGACTTTTCGAAGAACGTATACCCTGATATGTTGAAGAAGTTGAACTCGATAGTTGAAGCGAACAAAGGTCACATTGCTGCCGGAAAGCTGACATGGGGTGATTTCGTGTTCACCAGCATGTTTGACTACCTGAAGACCATGCTTCAAATACCTGATCTGGAAGTGCAATATCCTGCTTTCAAGAAAGTCTTGCAATCCGTCCTGACACAGCCCAAAGTGAAGGCTTTCTTAGATTTGGGAAGGCCATACGAATTTGAATTTTAATATTCTAATTAAATAAATATTTTGTTTTTGTTGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACC
ORF
ATGCCTAAGGTTGTGTACCATTACTTCGCTTGCAAGGCTCTCGGGGAGAGCGGCCGTATGCTGCTCGCCTACGGAGGCCAGGACTTCGAAGACCACCGCGTGCTCTCCGCTGACTGGCCTGACTTCAAGCCAAAGACTCCGTTCGGTCAGATGCCAGTATTAGTGATCGACGGCAAGCAGTACGCTCAGAGCACCGCCATCTGCAGGTACCTCGGCCGCAAGTACGGGCTCGCCGGGGCCAATGACGAGGAGGCCTTCGAGATCGACCAGAACGTGGAGTTCCTGCACGATATTCGCGCCAAAGCGGCCGCTGTATACTACGAAGCTGATGAGGAGTTAAAAGCAAAAAAACACGAGGACTTTTCGAAGAACGTATACCCTGATATGTTGAAGAAGTTGAACTCGATAGTTGAAGCGAACAAAGGTCACATTGCTGCCGGAAAGCTGACATGGGGTGATTTCGTGTTCACCAGCATGTTTGACTACCTGAAGACCATGCTTCAAATACCTGATCTGGAAGTGCAATATCCTGCTTTCAAGAAAGTCTTGCAATCCGTCCTGACACAGCCCAAAGTGAAGGCTTTCTTAGATTTGGGAAGGCCATACGAATTTGAATTTTAA
Protein
MPKVVYHYFACKALGESGRMLLAYGGQDFEDHRVLSADWPDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVYPDMLKKLNSIVEANKGHIAAGKLTWGDFVFTSMFDYLKTMLQIPDLEVQYPAFKKVLQSVLTQPKVKAFLDLGRPYEFEF*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13409.1 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF02798.15 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF13417.1 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF00043.20 | Glutathione S-transferase, C-terminal domain | |
| BLASTP/NCBI-nr | NP_001037077 | glutathione S-transferase sigma 1 [Bombyx mori] gb|AAP50848.1| glutathione S-transferase 2 [Bombyx mori] gb|ABI15775.1| glutathione S-transferase 2 [Bombyx mori] | 1e-151 |
| InterPro | IPR010987 | Glutathione-S-Trfase_C-like | |
| InterPro | IPR017933 | Glutathione_S_Trfase/Cl_chnl_C | |
| InterPro | IPR012336 | Thioredoxin-like_fold | |
| InterPro | IPR004045 | Glutathione_S-Trfase_N | |
| Gene Ontology(MF) | GO:0005515 | protein binding |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|---|---|---|
| Gene01572 | BMgn009107 | chr3 | 14615465 | 14622662 | Bm_scaf63 | 1451984 | 1459181 | + |
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS201021 | DPSCF300147 | 329066 | 330300 | + |
| D. plexippus | DPOGS201022 | DPSCF300147 | 333797 | 335055 | + |
| D. plexippus | DPOGS201020 | DPSCF300147 | 316847 | 321066 | + |
| H. melpomene | HMEL003618 | HE669239 | 10269 | 22434 | - |
| H. melpomene | HMEL003617 | HE669239 | 3376 | 8278 | + |
| M. sexta | Msex003977-RA | scaffold00067 | 3388 | 6490 | + |
| M. sexta | Msex003978-RA | scaffold00067 | 6426 | 48960 | - |
| M. sexta | Msex003979-RA | scaffold00067 | 51488 | 85661 | - |
| P. xylostella | Px009257.1 | scaffold_328 | 93440 | 97145 | - |