KAIKObase gene description page [BMgn009393/Gene08348]
Outline
| Official gene ID | BMgn009393 |
|---|---|
| Local gene ID | Gene08348 |
| Chromosome | chr14 |
| Start (Chr.) | 10537166 |
| End (Chr.) | 10550591 |
| Scaffold | Bm_scaf81 |
| Start (Scaf.) | 873586 |
| End (Scaf.) | 887011 |
| Direction | - |
Member sequences
| ID | Type | Representative |
|---|---|---|
| NM_001044023.1 | publicly available mRNA | No |
| AK377781 | full-length cDNA | No |
| AK377530 | full-length cDNA | Yes |
| BGIBMGA009393 | predicted gene | No |
Representative sequence
Nucleotide
CACGAGCGATAATAAAGCATAGTCAATTTTAACTGAAATGCAAAATCTTTTGAACGTTAGATGCTGTCAGCGTTCGTTGGTACAGTTGTTTGATATTTATTTTAATTGTCTTTTTATATATAAATAGTGGAACATTAATCACGGAATCCTGTATAGTATATACCGATTGGTCACATAACAGACCACTAAAATGAAGCCTATATTTTTGGTATTACTCGTCGCTACAAGCGCCTACGCTGCACCATCGGTGACCATCAATCAATACAGTGATAATGAAATTCCACGCGACATTGATGATGGAAAAGCTAGTTCCGTAATCTCACGTGCATGGGACTACGTCGATGACACCGACAAAAGCATCGCCATCCTCAACGTTCAAGAGATCTTGAAGGACATGGCCAGCCAGGGCGACTATGCAAGTCAAGCATCAGCGGTGGCCCAAACCGCCGGAATTATCGCCCATCTATCTGCCGGTATCCCCGGTGATGCCTGTGCAGCCGCTAACGTCATTAACTCTTACACAGACGGCGTCAGGTCCGGAAACTTCGCCGGCTTCAGACAATCTCTCGGTCCCTTCTTCGGACACGTGGGACAAAACTTGAATCTTATCAATCAACTCGTCACTAACCCTGGTCAACTCCGATACTCTGTCGGACCAGCCCTGGGTTGTGCCGGAGGTGGAAGAATCTATGACTTCGAAGCCGCTTGGGATGCAATCTTAGCCAGCAGTGACTCTGGTTTCTTAAATGAGGAGTACTGCATCGTCAAGAGATTGTACAACTCTCGCAACAGCCAAAGCAACAACATCGCTGCCTACATCACCGCTCACTTACTTCCTCCGGTTGCTCAAGTGTTCCACCAATCAGCTGGATCAATCACAGACCTCCTGAGAGGCGTTGGCAACGGTAATGACGCGACCGGTTTAGTTGCTAATGCTCAAAGATATATTGCACAAGCAGCCAGCCAGGTTCACGTCTAAATAAGAACTGTAAATAATGTATATATATAATTATATAAAAGATATATATAAACCATATACAAACATATATATCATTATAAGACAATCTACCTATATAAAAACAGACTAAAATTAATAATTATGTATACTTTAATTGTGTTTAGGACATTTTATGCAAATTGTGTTTGCGTTAGGATTTTTTTTGGAAGTTTTTTAGATTATTTATGAATATATAAATAAATATACGTTAATATAATATATATTATATAAATCAACGACACGGCTTTTCATTTTGGTGATGATCAATCTTATTGTTCTTCTAATTGATTTTTTTGTACAATAAAGATGTATCCAGTTTTCCAGATAAAAAAAAAAAAAAAAAAAAAAA
ORF
ATGAAGCCTATATTTTTGGTATTACTCGTCGCTACAAGCGCCTACGCTGCACCATCGGTGACCATCAATCAATACAGTGATAATGAAATTCCACGCGACATTGATGATGGAAAAGCTAGTTCCGTAATCTCACGTGCATGGGACTACGTCGATGACACCGACAAAAGCATCGCCATCCTCAACGTTCAAGAGATCTTGAAGGACATGGCCAGCCAGGGCGACTATGCAAGTCAAGCATCAGCGGTGGCCCAAACCGCCGGAATTATCGCCCATCTATCTGCCGGTATCCCCGGTGATGCCTGTGCAGCCGCTAACGTCATTAACTCTTACACAGACGGCGTCAGGTCCGGAAACTTCGCCGGCTTCAGACAATCTCTCGGTCCCTTCTTCGGACACGTGGGACAAAACTTGAATCTTATCAATCAACTCGTCACTAACCCTGGTCAACTCCGATACTCTGTCGGACCAGCCCTGGGTTGTGCCGGAGGTGGAAGAATCTATGACTTCGAAGCCGCTTGGGATGCAATCTTAGCCAGCAGTGACTCTGGTTTCTTAAATGAGGAGTACTGCATCGTCAAGAGATTGTACAACTCTCGCAACAGCCAAAGCAACAACATCGCTGCCTACATCACCGCTCACTTACTTCCTCCGGTTGCTCAAGTGTTCCACCAATCAGCTGGATCAATCACAGACCTCCTGAGAGGCGTTGGCAACGGTAATGACGCGACCGGTTTAGTTGCTAATGCTCAAAGATATATTGCACAAGCAGCCAGCCAGGTTCACGTCTAA
Protein
MKPIFLVLLVATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYASQASAVAQTAGIIAHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQSLGPFFGHVGQNLNLINQLVTNPGQLRYSVGPALGCAGGGRIYDFEAAWDAILASSDSGFLNEEYCIVKRLYNSRNSQSNNIAAYITAHLLPPVAQVFHQSAGSITDLLRGVGNGNDATGLVANAQRYIAQAASQVHV*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF05849.6 | Fibroin light chain (L-fibroin) | |
| BLASTP/NCBI-nr | BAB39499 | fibroin L-chain [Bombyx mandarina] gb|AAL83649.1| silk fibroin [Bombyx mori] | 0.0 |
| InterPro | IPR008660 | L-fibroin | |
| Gene Ontology(CC) | GO:0005576 | extracellular region |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS205997 | DPSCF300164 | 366175 | 370206 | + |
| H. melpomene | HMEL005150 | HE669914 | 32433 | 38708 | - |
| M. sexta | Msex010148-RA | scaffold00243 | 429232 | 438245 | + |
| P. xylostella | Px001199.1 | scaffold_114 | 742484 | 747848 | + |