KAIKObase gene description page [BMgn010331/Gene07309]
Outline
| Official gene ID | BMgn010331 |
|---|---|
| Local gene ID | Gene07309 |
| Chromosome | chr12 |
| Start (Chr.) | 12979736 |
| End (Chr.) | 12984096 |
| Scaffold | Bm_scaf109 |
| Start (Scaf.) | 40120 |
| End (Scaf.) | 44480 |
| Direction | - |
Member sequences
| ID | Type | Representative |
|---|---|---|
| BGIBMGA010331 | predicted gene | Yes |
Representative sequence
Nucleotide
ATGCCATACTTGGCGTGCTGGCGAGCTGCGAAGGTCATCCACGAACTGTTACTGGACAATGTGTTAAAGACGCCGTTGCAATTCTTCGAAGTCACGCCTATTGGCAGGATACTGTCTAGATTCGGTAAAGACGTTGACGTTTTGGACACTTCGCTACCGTCGGAGGCTTCAGACGTGATATATTGCACGTTCGAGGTACTGGGAACGCTGTTCGTGATAAGCGTGTCGACGCCCTTATTCTTAGTGATCGTGGTCCCGGTGGGTCTGATCTACTACGTGATCCAGAGGTTCTACGTGGCGACGTCCCGGCAACTCAAACGGCTGGAGTCGATATCGCGATCGCCCATCTATTCGCATTTCGGCGAGAGTATCACCGGGGCGTCCACAATACGAGCCTACGGTGTAACTGATAGATTTATTGAAGAAAGCGAAAGTCGAGTGGATCACAATCAGTCGTGCTATTACCCGAGCTGCATCGCGAATCGGTGGCTGGCCATCCGTCTGGAAATGATTGGAAACTTCATTATATTCAGCGCGGCTGTGTTCGCGGTGCTCGGTAGAAACTCTATCTATCCGGGTATTGTAGGACTCTCGATCAGCTATGCGCTACAGATCACTCAAACACTCAATTGGTTGGTCAGAATGACCTCTGAAGTTGAAACGAATATTGTCGCCGTCGAAAGGATAAAAGAGTACGCGGAAACCGAACAGGAGGCCGCGTGGAACTTGGAGAAAGGGCCCGGCGCAACGTGGCCCGAGACGGGAGCGCTACAGCTGGAGCAGCTGACGCTGGAGTACCGCCCCGGCGAGCCGGCGCTGCGTGACGTCACGTGCACGGTGGCGCCGCGCGACAAGCTCGGCATCGTGGGACGCACCGGCGCCGGCAAGTCTACTCTCACGCTCGGGCTCTTCAGGATCGTGGAGGCAGCCGCCGGACGCATCCTGATCGACGGCGTCGACATCGCGACCCTCGGGCTACACCAGCTGCGGTCGCGCATCACCATCATCCCGCAGGAGCCGATCCTGTTCTCGGGCACGCTGCGCTCCAACCTGGACCCGTTCGAGGCGTACAGCGACGAGGAGATCTGGCGCGCGCTGGAACACGCCCACCTCCGTGCCTTCGTGCAGGGGCTGCCGGCCGGGCTGCGGCACGAGGTGGCGGAGGGCGGCGAGAACCTGTCGGTGGGACAGCGCCAGCTCGTGTGCCTGGCGCGCGCGCTGCTACGCAAGACGCCGCTGCTGGTGCTGGACGAGGCCACCGCGGCCGTCGACCTCGAGACTGACGACCTCATCCAGAAGACGATCCGCTCGGAGTTCGCGTCGTGCACGGTGCTCACTATCGCGCACCGCCTCAACACCATCATGGACTCCACCAAAGTGATGGTGCTCGACCGCGGGCAGCTCGTAGAATATGCGGCCCCTCAACAACTACTTAACGATAAAAACTCCATTTTCTACTCCATGGCTAAAGATGCCGGAATAGTTAACTAA
ORF
Protein
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13555.1 | P-loop containing region of AAA domain | |
| Pfam/Hmmer3 | PF01935.12 | Domain of unknown function DUF87 | |
| Pfam/Hmmer3 | PF01926.18 | 50S ribosome-binding GTPase | |
| Pfam/Hmmer3 | PF00664.18 | ABC transporter transmembrane region | |
| Pfam/Hmmer3 | PF09818.4 | Predicted ATPase of the ABC class | |
| Pfam/Hmmer3 | PF13481.1 | AAA domain | |
| Pfam/Hmmer3 | PF13304.1 | AAA domain | |
| Pfam/Hmmer3 | PF00005.22 | ABC transporter | |
| BLASTP/NCBI-nr | EHJ71740 | ATP-binding cassette sub-family C member 1 [Danaus plexippus] | 0.0 |
| InterPro | IPR003593 | AAA+_ATPase | |
| InterPro | IPR003439 | ABC_transporter-like | |
| InterPro | IPR011527 | ABC_transptrTM_dom_typ1 | |
| InterPro | IPR017940 | ABC_transporter_type1 | |
| InterPro | IPR001140 | ABC_transptr_TM_dom | |
| InterPro | IPR017871 | ABC_transporter_CS | |
| Gene Ontology(BP) | GO:0006810 | transport | |
| Gene Ontology(BP) | GO:0055085 | transmembrane transport | |
| Gene Ontology(MF) | GO:0005524 | ATP binding | |
| Gene Ontology(MF) | GO:0000166 | nucleotide binding | |
| Gene Ontology(MF) | GO:0042626 | ATPase activity, coupled to transmembrane movement of substances | |
| Gene Ontology(CC) | GO:0016021 | integral to membrane | |
| Gene Ontology(MF) | GO:0017111 | nucleoside-triphosphatase activity | |
| Gene Ontology(MF) | GO:0016887 | ATPase activity |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|---|---|---|
| Gene07308 | BMgn010332 | chr12 | 12952701 | 12969912 | Bm_scaf109 | 13085 | 30296 | - |
| Gene08928 | BMgn007769 | chr15 | 9812337 | 9871438 | Bm_scaf3 | 82826 | 141927 | + |
| Gene08864 | BMgn007735 | chr15 | 8909578 | 8944368 | Bm_scaf3 | 1009896 | 1044686 | - |
| Gene13511 | BMgn011220 | chr23 | 18775517 | 18805150 | Bm_scaf12 | 4269387 | 4299020 | - |
| Gene16175 | BMgn010849 | unknown | ND | ND | Bm_scaf228 | 47746 | 61144 | - |
| Gene13915 | BMgn017063 | chr24 | 9238454 | 9243472 | Bm_scaf43 | 3390354 | 3395372 | + |
| Gene15014 | BMgn002317 | chr26 | 7483749 | 7631668 | Bm_scaf34 | 2053092 | 2201011 | + |
| Gene08871 | BMgn007738 | chr15 | 9021031 | 9043137 | Bm_scaf3 | 911127 | 933233 | - |
| Gene08887 | BMgn007784 | chr15 | 9188046 | 9200762 | Bm_scaf3 | 753502 | 766218 | + |
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS203074 | DPSCF300294 | 4632 | 25201 | - |
| D. plexippus | DPOGS208634 | DPSCF300281 | 373272 | 387614 | - |
| D. plexippus | DPOGS208066 | DPSCF300282 | 99215 | 127066 | - |
| D. plexippus | DPOGS208065 | DPSCF300282 | 161574 | 175789 | - |
| D. plexippus | DPOGS208084 | DPSCF300282 | 147015 | 157052 | + |
| D. plexippus | DPOGS208713 | DPSCF300043 | 81043 | 90868 | - |
| D. plexippus | DPOGS208495 | DPSCF300064 | 915199 | 919147 | - |
| D. plexippus | DPOGS208075 | DPSCF300282 | 21073 | 39057 | + |
| D. plexippus | DPOGS202687 | DPSCF300438 | 43347 | 66738 | + |
| D. plexippus | DPOGS208076 | DPSCF300282 | 44437 | 53985 | + |
| D. plexippus | DPOGS208494 | DPSCF300064 | 919781 | 939075 | - |
| H. melpomene | HMEL003351 | HE668909 | 140330 | 177350 | - |
| H. melpomene | HMEL003354 | HE668909 | 203310 | 223866 | + |
| H. melpomene | HMEL014185 | HE671430 | 51966 | 67721 | + |
| H. melpomene | HMEL011731 | HE671216 | 67233 | 96598 | + |
| H. melpomene | HMEL011589 | HE671201 | 11703 | 27835 | - |
| H. melpomene | HMEL008762 | HE670829 | 176598 | 205814 | - |
| H. melpomene | HMEL003355 | HE668909 | 224456 | 251325 | - |
| H. melpomene | HMEL003342 | HE668909 | 53427 | 93008 | + |
| H. melpomene | HMEL015261 | HE672080 | 644204 | 655132 | + |
| M. sexta | Msex007779-RA | scaffold00158 | 699678 | 701278 | - |
| M. sexta | Msex008857-RA | scaffold00192 | 222223 | 265463 | - |
| M. sexta | Msex018602-RA | scaffold00309 | 328171 | 332674 | + |
| M. sexta | Msex011186-RA | scaffold00313 | 312865 | 341890 | + |
| M. sexta | Msex012667-RA | scaffold00439 | 91228 | 134211 | - |
| M. sexta | Msex014413-RA | scaffold00690 | 79433 | 92071 | - |
| M. sexta | Msex014411-RA | scaffold00690 | 52054 | 79371 | + |
| M. sexta | Msex012427-RA | scaffold00415 | 11 | 35987 | + |
| M. sexta | Msex012670-RA | scaffold00439 | 184359 | 225466 | + |
| M. sexta | Msex018659-RA | scaffold00540 | 107390 | 123922 | - |
| M. sexta | Msex007760-RA | scaffold00158 | 347115 | 402289 | + |
| M. sexta | Msex009419-RA | scaffold00215 | 123662 | 137975 | + |
| P. xylostella | Px001274.1 | scaffold_1153 | 4862 | 13438 | + |
| P. xylostella | Px004042.1 | scaffold_164 | 387212 | 447458 | - |
| P. xylostella | Px005403.1 | scaffold_199 | 854564 | 879035 | + |
| P. xylostella | Px006710.1 | scaffold_236 | 4405 | 26723 | + |
| P. xylostella | Px009834.1 | scaffold_352 | 169022 | 191602 | - |
| P. xylostella | Px009835.1 | scaffold_352 | 192939 | 220411 | - |
| P. xylostella | Px012780.1 | scaffold_51 | 12664 | 57869 | - |
| P. xylostella | Px009134.1 | scaffold_321 | 178892 | 228000 | - |
| P. xylostella | Px001752.1 | scaffold_125 | 132273 | 134975 | + |
| P. xylostella | Px010506.1 | scaffold_388 | 431 | 2968 | - |
| P. xylostella | Px002415.1 | scaffold_137 | 494163 | 513079 | + |
| P. xylostella | Px002416.1 | scaffold_137 | 513599 | 532977 | - |
| P. xylostella | Px002418.1 | scaffold_137 | 552867 | 576380 | + |
| P. xylostella | Px008999.2 | scaffold_316 | 108977 | 138269 | + |
| P. xylostella | Px002419.1 | scaffold_137 | 576715 | 581467 | + |