KAIKObase gene description page [BMgn010555/Gene07093]
Outline
| Official gene ID | BMgn010555 |
|---|---|
| Local gene ID | Gene07093 |
| Chromosome | chr12 |
| Start (Chr.) | 7047051 |
| End (Chr.) | 7062522 |
| Scaffold | Bm_scaf6 |
| Start (Scaf.) | 5888734 |
| End (Scaf.) | 5904205 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| BGIBMGA010555 | predicted gene | Yes |
Representative sequence
Nucleotide
ATGTTTTTCAGGACGCAAGGGGCTAAAGGTGAGATAGCCGTGAATGGCGCGTGTACCTGCGCCTCGCAGTCAAGCGGACGCGGCGGTGCACGATACATCCGCCAGCACGATGACCTGCGTGCGTATCTGACGGTCTACGAAGCAATGTCTCTCGCAGCTGCTCTTAAACTGGCCGACTTCTCAAGACATGAAAGAAAGGAAAAGGTTTATGAAATTCTAGCTCTTTTGGGTTTAAGCGCTGCGGCGGAAACACTATGCCGTGACCTGTCCGGAGGCCAAAAGAGAAGATTGGCTGTAGCTTTAGAATTGCTCTCAGATCCATCCCTCATGTTCCTGGATGAGCCTACTACCGGCTTGGACTCATCTGCATCGGCGTCATTGATAACCTTACTGAACAATCTCGCTCGAGGAGGTCGTACACTAATAGCTACAATTCATCAACCTTCTGCCCTCATATTCGAGAAGATCGACAATGTGTACTGCCTGGAGGCTGTAATGGAAGTTGCGTCCGGTGAATACGACGTAGACCTTATAAAGGTGGCAAAGAAGATGAGTCAATTCAAAACAGACGACGCTGTCAATGGCAGCTGGGTAGAGATTCCAACCATACCAGCACTGCCTTCTTCTTTAGATATAAGTACTGAAATGAAGTCGAAACATTTCGGAGAGAGTCCCAAAATGCGTAAACTCTCAAAGAACATATACAAGCCATCAGGGCAGGCTCTATTCATGTACCGAGTTGCTGCTCACGTTGTTATCGCTTTAATATTTGGATATCTTTACTCCGGAGTCGGCGGCGAAGCTAGTTCAGTACTAGGGAACTATGTATATCTGTATGGATCGATGTTGCTAACCGTGTACACTGGAAAAATGTCCGTTACATTATCATTTCCCTTAGAAATGGAAATACTCAAAGGCGAATACTTCAATCGATGGTATAACCTGGCGCCGTATATATTTTCCATATTAGCAGTGGAACTACCATTTCAAATGATATCCTGCGTGTCCTATGTCGTTCTATCGTATTGGTTGACCGACAACCCGTTGGAGCCGACGCGAGCAACGTTGTTCTTGGCCACAATCGTAGCCACGTCTTTATGCGCACAAGCCTGGGGATATTTCATCGGTTCGACAACACCCACAAAGATCGCAGTGTTCATAGGACCAGTGCTGGCGTGTCTGTTTTCAGTATTCGGATTCTGTCTCGCACTATCTGACACGCCACGTTACTTCCGCTGGCTCCACTACATCTCGTACTTCAGAGCCGGCTTTCATGTCGCTGTATACTCCGTTTACGGTTTTAATAGAAAAAAACTTCAATGCTCTAAACTATATTGTCAATTCGTAACGCCAAAGACCTTCTTAAAACAAATGGACATGGAAGAGGTGGACATCGGTGGAAACATGACTATAGTTATATTAACTACAGTGTTAATGCATTTATTAACGTGCGCTGCTCTTTGGTACAGACTTAATAAACGATGA
ORF
Protein
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF01061.19 | ABC-2 type transporter | |
| Pfam/Hmmer3 | PF13558.1 | Putative exonuclease SbcCD, C subunit | |
| Pfam/Hmmer3 | PF04316.8 | Anti-sigma-28 factor, FlgM | |
| Pfam/Hmmer3 | PF13304.1 | AAA domain | |
| Pfam/Hmmer3 | PF00005.22 | ABC transporter | |
| BLASTP/NCBI-nr | EHJ66997 | hypothetical protein KGM_08577 [Danaus plexippus] | 0.0 |
| InterPro | IPR020064 | ABC_transptr_G1-like | |
| InterPro | IPR003439 | ABC_transporter-like | |
| InterPro | IPR013525 | ABC_2_trans | |
| InterPro | IPR017871 | ABC_transporter_CS | |
| Gene Ontology(CC) | GO:0016020 | membrane | |
| Gene Ontology(MF) | GO:0005524 | ATP binding | |
| Gene Ontology(CC) | GO:0016021 | integral to membrane | |
| Gene Ontology(MF) | GO:0016887 | ATPase activity |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS205647 | DPSCF300023 | 52140 | 60567 | - |
| M. sexta | Msex011244-RB | scaffold00306 | 269925 | 321159 | + |
| M. sexta | Msex011244-RC | scaffold00306 | 303774 | 321159 | + |
| P. xylostella | Px007950.1 | scaffold_282 | 282382 | 298666 | - |