KAIKObase gene description page [BMgn010790/Gene14814]
Outline
| Official gene ID | BMgn010790 |
|---|---|
| Local gene ID | Gene14814 |
| Chromosome | chr26 |
| Start (Chr.) | 890812 |
| End (Chr.) | 893648 |
| Scaffold | Bm_scaf25 |
| Start (Scaf.) | 890812 |
| End (Scaf.) | 893648 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| AK382187 | full-length cDNA | Yes |
| BGIBMGA010790 | predicted gene | No |
Representative sequence
Nucleotide
TGATTCAAAAGATTATCGTTTGGTGGTATAAATCGACTCGACATAATAGTAACAAAACAAGTTACGAACGCTAATATTGTACGATTGTGCTAGACCGTGAAACCCACGAGTCTAGACCATTTAACGTAGTGTAAATTAAATATTTTTATTGTGATTTAAGCATTACATAATGCCTTTGCTTAGGCTGACGACTGGTACCTTCGGGCAGCTGCGTACGTTTGCTACGTCAGCATCCCTCGCAAAACGTGTTAAGACCTTCGCAGTCTATCGATGGAACCCCGATGAGCCCGACAAGAAACCTTATACGCAAAATTTCGAAGTGGATTTGGACGACTGCGCACCGATGGTATTGGACGCTTTGCTGAAGATTAAGAACGAAGTAGACCCAACCCTGACCTTCAGACGTTCGTGCCGAGAGGGCGTTTGTGGTTCTTGTGCGATGAATATCGACGGCGTCAACACTCTGGCCTGCATCAGCCATATCGATCAAAACATTTCCAAGCCGACGAAGATTTATCCTCTACCTCACATGTACGTCGTCAAAGACTTGGTCCCCGATCTGACCAACTTTTACCGGCAGTACCAGTCTATCGAGCCGTGGCTGCAGCGTGAAAATGAAGCTGTTAAAGGTAAGGAGACTCAATTGCTCCAGGACGTAGAGGACCGCGTCAAGTTGGATGGTCTCTATGAATGTGTGCTATGTGCTTGCTGTTCGACGAGTTGCCCGTCCTACTGGTGGAATGGAGATAAGTACCTAGGCCCTGCTGTCCTCATGCAGGCCTACAGGTGGATCATTGACTCCCGAGATGAAGCCACTGAGAAACGTTTATCAAAACTCAAGGACACATACTCTGTATACCGTTGCCATACAATCATGAACTGCACTCGCACATGCCCTAAAGGTCTGAACCCAGGCCGGGCCATTGCCCAGATCAAAACCTTACTCTCGGGTATAGTTAAGAAGCAGCCACCTATAATGGATCCTGCTGGCCTGCAGAAGCAGACAGCGAGCAATTAATAAACAAATTGTAAATATGATATTGTAGTTCAAGGGCTGAAATCTTAACTGTAGCTACAATTGAGTGAATGTTAAGGAGTAAGTTTACTAAATGTAAAATATGACATTAATGAAAACTGCACAAAAGCTAACGAGTGCTTTAATGATGTTGACTTCAACCTATATTATCATTATAAAATATTTCCATTGGTTATCTCTTTACATAAACATCATAAAATTAGAAATGATGTACAAACAAGCTCAGTTGAAATTAAATAATAAAGCTTATTTGATATTATTTTAAACATTAAAATCTCATTTTGGTGTCTATCCTATGGCCTATGTCATGTACTACTCACCATCTGGTCTGCCTCTTAAAATATATATGAAATGAATATAAATTTTTGATGATTATTTTTACACAATTTATGAAAAAAGGAATTATATTTAAGTGTAAAGATATTTTAATGTTAATGTTCAAGTAAAATTCAATCACTGTTTGAACTAAAATATTTGATTCCCTGAAATCAGATGACTAATGTAAATGAAAACATTTGAATGTTTGTCTACATCTGTTCAACTCTCAAATTACTAGCCTAAAATAATGACATAGCACCTCTTAAAGCTGGGAGTATTTTTCTGACACATCTCTTAACATCTATATTATGATGGCTTCTTTGGTCTTACTTGCCCAATTGAAATGCAGTTTTGAACTGAACAAAAATACCATTTGGATTTTACTGCTGGATTTGGCTTAATAAGAGCTCACAGGATGTCAATCGTAGTAGCCCATGCTTAAGTTGAATATTTTAATATGATATCATTATTTTTAAATATAATATAATTTCGTAGTTGGTAATTATATAGAAATATAATATTAAATAAAACATAATGAACATGAAGATTACAATTTAATGAAAAAAATGTCAATAGTAAAATTAGCAGCATTTCCATTCATTTTAATTTACTGGTAGTGGGACACACTGTGAGACCACAAAACTCTGAACCAATATCCTGCAAATTATGATTTGAAGCCATTATATAATACCATTAGACCATAAAATACCCAGTCAGAAGAAAGCTAAATGCATTTCCCTATGTCTATACCACTCGGTACCAGCCCAGAGTTCTTACCCCATTTTACATCAAAATCATGTTGTTTAGTAAATTTCATGACAATATACTTTCTCTTGATCTAATTTTCTTATATCAAGTATACAAAGAAATATGTCATTATATTTATGTTAGCACAACATTGTAGTAACATTTATAAAGGGTTGTAATTATCACAAAGTAGTACTTAATTATTTGATAGTTTTGATAAATTGAACCATTTTCAGATATCATAACCGTTGAATAGACAAAAATCAGGATATTGTACCTTATTATACCTGGTAATTGGGAATCTGGACCAAGCTTCAGACAACCCGTCATTGTGTCACGAACCTTGAGGGAATCTTATTTTTAACGGCAAACGTCTACATGATGATGACAATGACAGATTCCTAAATTATGTATATACATTATGAGTGATTTGGAGAATTCCATTCTTCGGACAAATAAATACAGACTCCTATAGGAAAAGTTTTCCTTTATAAAATTTAAAATACTTTTTTACTAAAAGCCAGAAACTATTTTTTATAAATAGTGGTTATTATCAAACATTTTCTTGTAAAATTACATAGGAAATCGTCCACGATTCGCAATAAAATCATTGAAAAAAGTATTATTCAAATAGTATTGTTATAATATGTTGCGCTTTTCACGTTATTTATATCGTTTCATTGGGTTTATTAAATAAAAATTGTAATTTACATGTACAGTTGTTTAATAAATGTTATTTAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ORF
ATGCCTTTGCTTAGGCTGACGACTGGTACCTTCGGGCAGCTGCGTACGTTTGCTACGTCAGCATCCCTCGCAAAACGTGTTAAGACCTTCGCAGTCTATCGATGGAACCCCGATGAGCCCGACAAGAAACCTTATACGCAAAATTTCGAAGTGGATTTGGACGACTGCGCACCGATGGTATTGGACGCTTTGCTGAAGATTAAGAACGAAGTAGACCCAACCCTGACCTTCAGACGTTCGTGCCGAGAGGGCGTTTGTGGTTCTTGTGCGATGAATATCGACGGCGTCAACACTCTGGCCTGCATCAGCCATATCGATCAAAACATTTCCAAGCCGACGAAGATTTATCCTCTACCTCACATGTACGTCGTCAAAGACTTGGTCCCCGATCTGACCAACTTTTACCGGCAGTACCAGTCTATCGAGCCGTGGCTGCAGCGTGAAAATGAAGCTGTTAAAGGTAAGGAGACTCAATTGCTCCAGGACGTAGAGGACCGCGTCAAGTTGGATGGTCTCTATGAATGTGTGCTATGTGCTTGCTGTTCGACGAGTTGCCCGTCCTACTGGTGGAATGGAGATAAGTACCTAGGCCCTGCTGTCCTCATGCAGGCCTACAGGTGGATCATTGACTCCCGAGATGAAGCCACTGAGAAACGTTTATCAAAACTCAAGGACACATACTCTGTATACCGTTGCCATACAATCATGAACTGCACTCGCACATGCCCTAAAGGTCTGAACCCAGGCCGGGCCATTGCCCAGATCAAAACCTTACTCTCGGGTATAGTTAAGAAGCAGCCACCTATAATGGATCCTGCTGGCCTGCAGAAGCAGACAGCGAGCAATTAA
Protein
MPLLRLTTGTFGQLRTFATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPWLQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPAVLMQAYRWIIDSRDEATEKRLSKLKDTYSVYRCHTIMNCTRTCPKGLNPGRAIAQIKTLLSGIVKKQPPIMDPAGLQKQTASN*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13746.1 | 4Fe-4S dicluster domain | |
| Pfam/Hmmer3 | PF00111.22 | 2Fe-2S iron-sulfur cluster binding domain | |
| Pfam/Hmmer3 | PF13534.1 | 4Fe-4S dicluster domain | |
| Pfam/Hmmer3 | PF13187.1 | 4Fe-4S dicluster domain | |
| Pfam/Hmmer3 | PF13085.1 | 2Fe-2S iron-sulfur cluster binding domain | |
| Pfam/Hmmer3 | PF13237.1 | 4Fe-4S dicluster domain | |
| Pfam/Hmmer3 | PF12838.2 | 4Fe-4S dicluster domain | |
| Pfam/Hmmer3 | PF13183.1 | 4Fe-4S dicluster domain | |
| BLASTP/NCBI-nr | EHJ68502 | succinate dehydrogenase [Danaus plexippus] | 0.0 |
| InterPro | IPR001041 | 2Fe-2S_ferredoxin-type | |
| InterPro | IPR012675 | Beta-grasp_dom | |
| InterPro | IPR025192 | Succ_DH/fum_Rdtase_N | |
| InterPro | IPR012285 | Fum_reductase_C | |
| InterPro | IPR006058 | 2Fe2S_fd_BS | |
| InterPro | IPR017896 | 4Fe4S_Fe-S-bd | |
| InterPro | IPR017900 | 4Fe4S_Fe_S_CS | |
| InterPro | IPR009051 | Helical_ferredxn | |
| InterPro | IPR004489 | Succ_DH/fum_Rdtase_Fe-S | |
| Gene Ontology(BP) | GO:0006099 | tricarboxylic acid cycle | |
| Gene Ontology(MF) | GO:0009055 | electron carrier activity | |
| Gene Ontology(MF) | GO:0051537 | 2 iron, 2 sulfur cluster binding | |
| Gene Ontology(BP) | GO:0055114 | oxidation-reduction process | |
| Gene Ontology(MF) | GO:0051536 | iron-sulfur cluster binding | |
| Gene Ontology(MF) | GO:0016491 | oxidoreductase activity |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS201688 | DPSCF300096 | 552204 | 553037 | - |
| H. melpomene | HMEL016878 | HE672077 | 240442 | 241290 | + |
| M. sexta | Msex013274-RA | scaffold00563 | 43566 | 54030 | + |
| P. xylostella | Px005114.1 | scaffold_19 | 1443298 | 1444149 | + |