KAIKObase gene description page [BMgn011819/Gene06527]
Outline
| Official gene ID | BMgn011819 |
|---|---|
| Local gene ID | Gene06527 |
| Chromosome | chr11 |
| Start (Chr.) | 11374612 |
| End (Chr.) | 11377918 |
| Scaffold | Bm_scaf16 |
| Start (Scaf.) | 2585049 |
| End (Scaf.) | 2588355 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| NM_001046666.1 | publicly available mRNA | No |
| AK385158 | full-length cDNA | No |
| AK385522 | full-length cDNA | Yes |
| BGIBMGA011819 | predicted gene | No |
Representative sequence
Nucleotide
GAGAGTTCATTCAATTCATTTCTTGAACTCGTACTGGTGGTATCTACAATTCTTGTTTTTCTCAATAAAAAATTCTAGAAGCAAAGCAAGGAGTCTTCAACGAATTGAAACTTAATTATTGAAGACCATTGACTTCAATAATTTAGATCAAAAGACATCAGAAGGCTACACTTCACGTAGACACTAATTTATTTTGTACTTAAAAAAAAGTTACATCTTTTAACATGTCCGAGAAGCATTTACAAACCGGAGATGTTTTGCCCCCATATAGTGGAAAACTTCGCGTTTTTGCTATGAGATTTTGTCCTTACGCCGAAAGGACAGTGCTGACCTTAAATGCTAAAAACATACCTTACGATTTAGTTTTTATCAATTTAGATCAGAAACCTGAATGGATCTTCAACTTTAGCCCGAAGGGTACTGTGCCAGCTTTGGAATATGAACCTGGTAAGGCACTCTTTGACAGCAACATTATAAATGTTTATCTTGATGAAAAGTATCCAGAGATTCCTCTGCAAGCATCAGACCCTCTGCGCAGAGCTCAAGACAAAATTCTCGTTGAGAGCTTTGCTCCAGCACAATCAGCTTACTATACAGCAGCATTCAATGCACAAGCTCTCGAGCCAAGCATGGTAGAGACATACCACAAAGGACTTGAGGGACTACAAAAAGAGCTTGAAACGCGCAGTACTAAATATTTACATGGGGACGAGCCTGGGTGGGTCGATTACACCCTTTGGCCATTTTTAGAGCGCTTTGAGGCTCTGCCCCTGATTGGAAAAGCTGAGTTTGCCATTGACAAAACTAAATATGAGAGACTGGTTACTTACATTGAAGCCATGAAAAATGTGCCTGCTGTGAAGTCGTACTTCTTAGCAGCAGAGACCCATGCGAAGTTCATTGAGTCTCGCGCCAAAGGAGATGCCAATTACAATATGCTAGACACTAGTGCTGTTTGCTGCATGCGCCCCAGGAAAAAGAAGGAATAAAAAGCATGTTTATGAAGCTTGGAACAATACAATGAAAATAAAGTATAATTTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ORF
ATGTCCGAGAAGCATTTACAAACCGGAGATGTTTTGCCCCCATATAGTGGAAAACTTCGCGTTTTTGCTATGAGATTTTGTCCTTACGCCGAAAGGACAGTGCTGACCTTAAATGCTAAAAACATACCTTACGATTTAGTTTTTATCAATTTAGATCAGAAACCTGAATGGATCTTCAACTTTAGCCCGAAGGGTACTGTGCCAGCTTTGGAATATGAACCTGGTAAGGCACTCTTTGACAGCAACATTATAAATGTTTATCTTGATGAAAAGTATCCAGAGATTCCTCTGCAAGCATCAGACCCTCTGCGCAGAGCTCAAGACAAAATTCTCGTTGAGAGCTTTGCTCCAGCACAATCAGCTTACTATACAGCAGCATTCAATGCACAAGCTCTCGAGCCAAGCATGGTAGAGACATACCACAAAGGACTTGAGGGACTACAAAAAGAGCTTGAAACGCGCAGTACTAAATATTTACATGGGGACGAGCCTGGGTGGGTCGATTACACCCTTTGGCCATTTTTAGAGCGCTTTGAGGCTCTGCCCCTGATTGGAAAAGCTGAGTTTGCCATTGACAAAACTAAATATGAGAGACTGGTTACTTACATTGAAGCCATGAAAAATGTGCCTGCTGTGAAGTCGTACTTCTTAGCAGCAGAGACCCATGCGAAGTTCATTGAGTCTCGCGCCAAAGGAGATGCCAATTACAATATGCTAGACACTAGTGCTGTTTGCTGCATGCGCCCCAGGAAAAAGAAGGAATAA
Protein
MSEKHLQTGDVLPPYSGKLRVFAMRFCPYAERTVLTLNAKNIPYDLVFINLDQKPEWIFNFSPKGTVPALEYEPGKALFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQSAYYTAAFNAQALEPSMVETYHKGLEGLQKELETRSTKYLHGDEPGWVDYTLWPFLERFEALPLIGKAEFAIDKTKYERLVTYIEAMKNVPAVKSYFLAAETHAKFIESRAKGDANYNMLDTSAVCCMRPRKKKE*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13409.1 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF13410.1 | Glutathione S-transferase, C-terminal domain | |
| Pfam/Hmmer3 | PF02798.15 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF13417.1 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF00043.20 | Glutathione S-transferase, C-terminal domain | |
| Pfam/Hmmer3 | PF00462.19 | Glutaredoxin | |
| BLASTP/NCBI-nr | NP_001040131 | glutathione S-transferase omega 1 [Bombyx mori] gb|ABD36128.1| glutathione S-transferase omega 1 [Bombyx mori] | 0.0 |
| InterPro | IPR005442 | GST_omega | |
| InterPro | IPR010987 | Glutathione-S-Trfase_C-like | |
| InterPro | IPR017933 | Glutathione_S_Trfase/Cl_chnl_C | |
| InterPro | IPR004045 | Glutathione_S-Trfase_N | |
| InterPro | IPR012336 | Thioredoxin-like_fold | |
| Gene Ontology(MF) | GO:0004364 | glutathione transferase activity | |
| Gene Ontology(MF) | GO:0005515 | protein binding | |
| Gene Ontology(BP) | GO:0008152 | metabolic process | |
| Gene Ontology(CC) | GO:0005737 | cytoplasm |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS213590 | DPSCF300033 | 486543 | 487729 | + |
| H. melpomene | HMEL005474 | HE670095 | 21375 | 53772 | - |
| P. xylostella | Px013473.1 | scaffold_554 | 186734 | 188933 | + |
| P. xylostella | Px016897.1 | scaffold_85 | 573297 | 578966 | + |