KAIKObase gene description page [BMgn011820/Gene06526]
Outline
| Official gene ID | BMgn011820 |
|---|---|
| Local gene ID | Gene06526 |
| Chromosome | chr11 |
| Start (Chr.) | 11369379 |
| End (Chr.) | 11372670 |
| Scaffold | Bm_scaf16 |
| Start (Scaf.) | 2590297 |
| End (Scaf.) | 2593588 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| NM_001114989.1 | publicly available mRNA | Yes |
| BGIBMGA011820 | predicted gene | No |
Representative sequence
Nucleotide
ATGGTCTCACCAAAAATTAACTTTAACACGAAGCATTTGGGAAAAGGCGATCCTTTACCACCTTGGAGCGGAAAGTTGCGAGTCTATAACATGCGTTTATGTCCCTTTGCACAGAGAACAATATTAACGTTAAACGCAAAGCAAATCGATTACGAAGTGATAAATATTGATCTCGTTAATAAACCAGAATGGTTGCCGACAAAAAGTATATTCGGTAAAGTACCTACAATTGAGGTGGAAGATGGAGTATGTATCTGCGAAAGTCTTATCATCGCAGAGTACTTAGAGGAGGTATACCCCGAAATACCTTTAATTTCAAAGGATCCAATAAAGAAAGCGTATGAAAAAATAATTATTGAAGCTTCCGAGCCTATATTTGTAATGTATTTCAAAGTTATGAGAACGCCCGATACGATCAACGATGAAACGTTAATGAGTTATCACAAAGCTCTTACATTTTTCGAGGGACAGTTAAGGAATCGTGGCACAAGATTTCTCGGCGGCGAAAAGCCTGGATTCGCAGACTACATGATCTGGCCGTGGTTCGAGAGAATTCAATCGATGAACGATGAAAAACTCAAAATTAAATCCGCAAAATTCGACTTACTGGTTGCCTACATAGAAAACATGTACAAGGATCCCGCCGTCAGTCAATACCTACTACCTAAAGATGTCATGGATAAATTACACGCCGAATATAAGACAGGGAAGTTCGAAGTACAATCGATTGAAGATCTGTTGTAA
ORF
ATGGTCTCACCAAAAATTAACTTTAACACGAAGCATTTGGGAAAAGGCGATCCTTTACCACCTTGGAGCGGAAAGTTGCGAGTCTATAACATGCGTTTATGTCCCTTTGCACAGAGAACAATATTAACGTTAAACGCAAAGCAAATCGATTACGAAGTGATAAATATTGATCTCGTTAATAAACCAGAATGGTTGCCGACAAAAAGTATATTCGGTAAAGTACCTACAATTGAGGTGGAAGATGGAGTATGTATCTGCGAAAGTCTTATCATCGCAGAGTACTTAGAGGAGGTATACCCCGAAATACCTTTAATTTCAAAGGATCCAATAAAGAAAGCGTATGAAAAAATAATTATTGAAGCTTCCGAGCCTATATTTGTAATGTATTTCAAAGTTATGAGAACGCCCGATACGATCAACGATGAAACGTTAATGAGTTATCACAAAGCTCTTACATTTTTCGAGGGACAGTTAAGGAATCGTGGCACAAGATTTCTCGGCGGCGAAAAGCCTGGATTCGCAGACTACATGATCTGGCCGTGGTTCGAGAGAATTCAATCGATGAACGATGAAAAACTCAAAATTAAATCCGCAAAATTCGACTTACTGGTTGCCTACATAGAAAACATGTACAAGGATCCCGCCGTCAGTCAATACCTACTACCTAAAGATGTCATGGATAAATTACACGCCGAATATAAGACAGGGAAGTTCGAAGTACAATCGATTGAAGATCTGTTGTAA
Protein
MVSPKINFNTKHLGKGDPLPPWSGKLRVYNMRLCPFAQRTILTLNAKQIDYEVINIDLVNKPEWLPTKSIFGKVPTIEVEDGVCICESLIIAEYLEEVYPEIPLISKDPIKKAYEKIIIEASEPIFVMYFKVMRTPDTINDETLMSYHKALTFFEGQLRNRGTRFLGGEKPGFADYMIWPWFERIQSMNDEKLKIKSAKFDLLVAYIENMYKDPAVSQYLLPKDVMDKLHAEYKTGKFEVQSIEDLL*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13409.1 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF13410.1 | Glutathione S-transferase, C-terminal domain | |
| Pfam/Hmmer3 | PF02798.15 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF13417.1 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF00043.20 | Glutathione S-transferase, C-terminal domain | |
| Pfam/Hmmer3 | PF00462.19 | Glutaredoxin | |
| BLASTP/NCBI-nr | NP_001108461 | glutathione S-transferase omega 4 [Bombyx mori] gb|ABY66601.1| glutathione S-transferase 13 [Bombyx mori] | 0.0 |
| InterPro | IPR005442 | GST_omega | |
| InterPro | IPR004046 | GST_C | |
| InterPro | IPR010987 | Glutathione-S-Trfase_C-like | |
| InterPro | IPR017933 | Glutathione_S_Trfase/Cl_chnl_C | |
| InterPro | IPR004045 | Glutathione_S-Trfase_N | |
| InterPro | IPR012336 | Thioredoxin-like_fold | |
| Gene Ontology(MF) | GO:0004364 | glutathione transferase activity | |
| Gene Ontology(MF) | GO:0005515 | protein binding | |
| Gene Ontology(BP) | GO:0008152 | metabolic process | |
| Gene Ontology(CC) | GO:0005737 | cytoplasm |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|