KAIKObase gene description page [BMgn015283/Gene03664]

Outline

Official gene ID	BMgn015283
Local gene ID	Gene03664
Chromosome	chr6
Start (Chr.)	17106009
End (Chr.)	17123156
Scaffold	Bm_scaf122
Start (Scaf.)	192230
End (Scaf.)	209377
Direction	+

Member sequences

ID	Type	Representative
NM_001043509.2	publicly available mRNA	No
AK384152	full-length cDNA	No
AK385667	full-length cDNA	Yes

Representative sequence

Nucleotide

 GATTCAGTTTTTAGGCACCGCCATTAACGGACCTGTGTTTGTTAAGTTTTAACAGTTATTTTACAAATTTCCTAAGATGACCATCGACCTGTACTACGTTCCCGGCTCTGCGCCCTGCAGGGCTGTACTGCTGACGGCGAAGGCGCTCAACTTAAACCTGAACCTCAAACTGGTAGACCTACACCACGGGGAACAGCTCAAACCAGAATATTTGAAGTTGAACCCTCAACACACGGTCCCGACCCTAGTCGACGATGGTCTTTCAATCTGGGAGTCCCGCGCCATCATCACCTACTTGGTGAACAAGTACGCTAAGGGCAGCAGTCTGTACCCCGAAGACCCCAAAGCTCGTGCCCTAGTTGACCAACGGTTGTATTTCGACATCGGAACTTTGTACCAGAGATTCAGTGATTATTTCTATCCCCAAGTATTCGCCGGTGCCCCAGCCGACAAGGCCAAGAACGAGAAGGTCCAGGAAGCCCTGCAGCTGCTGGACAAGTTCCTCGAGGGTCAGAAGTACGTGGCCGGACCGAACCTAACCGTCGCCGACCTGAGTCTCATCGCCAGTGTCTCCAGCCTGGAAGCCTCTGACATTGACTTCAAGAAGTACGCCAACGTTAAGAGATGGTACGAGACCGTCAAGAGTACAGCTCCGGGATACCAGGAGGCCAACGAGAAAGGACTGGAGGCATTCAAGGGACTTGTCAACAGCATGCTTAAAAAGTGAACACTTATCAACACGAAATGAAAACTTATTCAAAATAACGTCGCTGGAATTAAAATTGACCAACTAGGCAGAATTAAAACGTCTTTGCTTATATTAAAAATATTCTTTAAAATAATACATTATTAAATTAGGCTGAATTTAACAGTCGCCCTTTGCCTGAAAGTAAATTAATAAATTTCTGTTCGCATTTTATCGATATGTTTCGTTTTTTGTCATGTGATACCCAATCTGAAATTCCAGTTGACGTTTGTATTATTGAATTTCACAATATTCCACTTTCACGTTCACAATGTTTGTTCAAGTCACGAATGGTTTTGATGCTCTTTTTTTTCGTTTTTAAGTTTATAGTTTTTAAGGCACAAATAAAACTATTAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 

ORF

 ATGACCATCGACCTGTACTACGTTCCCGGCTCTGCGCCCTGCAGGGCTGTACTGCTGACGGCGAAGGCGCTCAACTTAAACCTGAACCTCAAACTGGTAGACCTACACCACGGGGAACAGCTCAAACCAGAATATTTGAAGTTGAACCCTCAACACACGGTCCCGACCCTAGTCGACGATGGTCTTTCAATCTGGGAGTCCCGCGCCATCATCACCTACTTGGTGAACAAGTACGCTAAGGGCAGCAGTCTGTACCCCGAAGACCCCAAAGCTCGTGCCCTAGTTGACCAACGGTTGTATTTCGACATCGGAACTTTGTACCAGAGATTCAGTGATTATTTCTATCCCCAAGTATTCGCCGGTGCCCCAGCCGACAAGGCCAAGAACGAGAAGGTCCAGGAAGCCCTGCAGCTGCTGGACAAGTTCCTCGAGGGTCAGAAGTACGTGGCCGGACCGAACCTAACCGTCGCCGACCTGAGTCTCATCGCCAGTGTCTCCAGCCTGGAAGCCTCTGACATTGACTTCAAGAAGTACGCCAACGTTAAGAGATGGTACGAGACCGTCAAGAGTACAGCTCCGGGATACCAGGAGGCCAACGAGAAAGGACTGGAGGCATTCAAGGGACTTGTCAACAGCATGCTTAAAAAGTGA 

Protein

 MTIDLYYVPGSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSDYFYPQVFAGAPADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGYQEANEKGLEAFKGLVNSMLKK* 

Auto annotation result

Program/Analysis	Accession	Description	Score/Expectation
Pfam/Hmmer3	PF13409.1	Glutathione S-transferase, N-terminal domain
Pfam/Hmmer3	PF13410.1	Glutathione S-transferase, C-terminal domain
Pfam/Hmmer3	PF02798.15	Glutathione S-transferase, N-terminal domain
Pfam/Hmmer3	PF13417.1	Glutathione S-transferase, N-terminal domain
Pfam/Hmmer3	PF00043.20	Glutathione S-transferase, C-terminal domain
BLASTP/NCBI-nr	NP_001036974	glutathione S-transferase delta 2 [Bombyx mori] pdb|3VK9|A Chain A, Crystal Structure Of Delta-Class Glutathione Transferase From Silkmoth pdb|3VK9|B Chain B, Crystal Structure Of Delta-Class Glutathione Transferase From Silkmoth pdb|3VK9|C Chain C, Crystal Structure Of Delta-Class Glutathione Transferase From Silkmoth pdb|3VK9|D Chain D, Crystal Structure Of Delta-Class Glutathione Transferase From Silkmoth dbj|BAD60789.1| glutathione S-transferase delta [Bombyx mori]	1e-157
InterPro	IPR004046	GST_C
InterPro	IPR010987	Glutathione-S-Trfase_C-like
InterPro	IPR017933	Glutathione_S_Trfase/Cl_chnl_C
InterPro	IPR004045	Glutathione_S-Trfase_N
InterPro	IPR012336	Thioredoxin-like_fold
Gene Ontology(MF)	GO:0005515	protein binding

Expression data (EST count)

Paralog/Ortholog genes

Paralogous genes

Gene ID	Official gene ID	Chr.	Chr. start	Chr. end	Scaffold ID	Start	End	Direction

Orthologous genes

Species	Gene ID	Scaffold ID	Start	End	Direction
D. plexippus	DPOGS208312	DPSCF300293	131964	136845	-
H. melpomene	HMEL011501	HE671185	26401	33644	+
M. sexta	Msex013502-RA	scaffold00514	133539	140162	-
P. xylostella	Px015896.1	scaffold_75	347197	350227	+