KAIKObase gene description page [BMgn016077/Gene08304]
Outline
| Official gene ID | BMgn016077 |
|---|---|
| Local gene ID | Gene08304 |
| Chromosome | chr14 |
| Start (Chr.) | 8586295 |
| End (Chr.) | 8587348 |
| Scaffold | Bm_scaf38 |
| Start (Scaf.) | 3431073 |
| End (Scaf.) | 3432126 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| AK379993 | full-length cDNA | Yes |
Representative sequence
Nucleotide
TAAATGAATTGATATTTCGTGGTCAAATTTTTCGATAGAACAACATCAATTTTTAAAGAGTGTTTAAATATTTTACTAGTTTTAAACGAACCGCCTGTAATATAGAAAACATCGAACCGGACATGCCTAAACTAAGCGAACGATTTCACAAAATCATCAGATTCTCTTTCAGGAACTATAGTTCGAAAACAGAAACGAAACCAAAGAAAGACGTGGACCCTTGTAGGACGTTCAAAATATATCGCTTCGGAGGTATTCTTTCAAAGGAACAACCCAAAATACAGAGCTATGAACTAGACGTTTCAACATGCGGCAAAATGGTTCTAGACGCTTTAATTAAAATAAAAGACAAGGACCCAACTCTGACGTTCCGGAGATCCTGTCGTGAAGGTATCTGCGGCTCTTGTGCGATCAACTTACAAGGAATGAACTGCTTGTCCTGCATCACTGAGATACCTCCAGCCAAGACCATCACCATACTCCCATTACCCCATATGTATGTCATCAGAGACCTGGTGGTTGACATGACACATTTTTTCAATGGCTACGATAGTATTCGACCGTATCTTGTGAGGAAAAACGATGGAGCCATTGGAAAAACTCAGTTAGCCCAAAGCATCAAAGACAATGAGAAAATGGTCGGATTATATGAGTGCGTTTTGTGCTCATGCTGTTCTACATCGTGTCCGAGTTACTGGTGGAACGGCAGGAGGTTCTTAGGCCCCGCCACGTTACTCCATGCGTATAGATGGGTCATAGATTCAAGAGACGACGACACGGAACAAAGACTGTATGAATTACGGGACAGTTTCAAAGCATTCAAATGTCACACCATCATGAACTGCTCGTTGGCTTGTCCCAAAGGCTTACATCCAGCAAAGGCTATTATGAACCTAAAAAGACTAATTTCAGGCCTAGACAAAAAACCTGTTCCAGAAATAGATCCTGGCAAGTTCAAGTCTGGCGGAGACAGTGGCAGTGGCAAAAACAAGAAATGTTGCCCATGAAGCTTTTGATATGTTTACATGGATTTAATTATGGTTTAATAAATTAACATTGTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ORF
ATGCCTAAACTAAGCGAACGATTTCACAAAATCATCAGATTCTCTTTCAGGAACTATAGTTCGAAAACAGAAACGAAACCAAAGAAAGACGTGGACCCTTGTAGGACGTTCAAAATATATCGCTTCGGAGGTATTCTTTCAAAGGAACAACCCAAAATACAGAGCTATGAACTAGACGTTTCAACATGCGGCAAAATGGTTCTAGACGCTTTAATTAAAATAAAAGACAAGGACCCAACTCTGACGTTCCGGAGATCCTGTCGTGAAGGTATCTGCGGCTCTTGTGCGATCAACTTACAAGGAATGAACTGCTTGTCCTGCATCACTGAGATACCTCCAGCCAAGACCATCACCATACTCCCATTACCCCATATGTATGTCATCAGAGACCTGGTGGTTGACATGACACATTTTTTCAATGGCTACGATAGTATTCGACCGTATCTTGTGAGGAAAAACGATGGAGCCATTGGAAAAACTCAGTTAGCCCAAAGCATCAAAGACAATGAGAAAATGGTCGGATTATATGAGTGCGTTTTGTGCTCATGCTGTTCTACATCGTGTCCGAGTTACTGGTGGAACGGCAGGAGGTTCTTAGGCCCCGCCACGTTACTCCATGCGTATAGATGGGTCATAGATTCAAGAGACGACGACACGGAACAAAGACTGTATGAATTACGGGACAGTTTCAAAGCATTCAAATGTCACACCATCATGAACTGCTCGTTGGCTTGTCCCAAAGGCTTACATCCAGCAAAGGCTATTATGAACCTAAAAAGACTAATTTCAGGCCTAGACAAAAAACCTGTTCCAGAAATAGATCCTGGCAAGTTCAAGTCTGGCGGAGACAGTGGCAGTGGCAAAAACAAGAAATGTTGCCCATGA
Protein
MPKLSERFHKIIRFSFRNYSSKTETKPKKDVDPCRTFKIYRFGGILSKEQPKIQSYELDVSTCGKMVLDALIKIKDKDPTLTFRRSCREGICGSCAINLQGMNCLSCITEIPPAKTITILPLPHMYVIRDLVVDMTHFFNGYDSIRPYLVRKNDGAIGKTQLAQSIKDNEKMVGLYECVLCSCCSTSCPSYWWNGRRFLGPATLLHAYRWVIDSRDDDTEQRLYELRDSFKAFKCHTIMNCSLACPKGLHPAKAIMNLKRLISGLDKKPVPEIDPGKFKSGGDSGSGKNKKCCP*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13746.1 | 4Fe-4S dicluster domain | |
| Pfam/Hmmer3 | PF00111.22 | 2Fe-2S iron-sulfur cluster binding domain | |
| Pfam/Hmmer3 | PF13534.1 | 4Fe-4S dicluster domain | |
| Pfam/Hmmer3 | PF13187.1 | 4Fe-4S dicluster domain | |
| Pfam/Hmmer3 | PF13085.1 | 2Fe-2S iron-sulfur cluster binding domain | |
| Pfam/Hmmer3 | PF13237.1 | 4Fe-4S dicluster domain | |
| Pfam/Hmmer3 | PF12838.2 | 4Fe-4S dicluster domain | |
| Pfam/Hmmer3 | PF13183.1 | 4Fe-4S dicluster domain | |
| BLASTP/NCBI-nr | EHJ70041 | succinate dehydrogenase, iron-sulfur subunit [Danaus plexippus] | 1e-151 |
| InterPro | IPR001041 | 2Fe-2S_ferredoxin-type | |
| InterPro | IPR012675 | Beta-grasp_dom | |
| InterPro | IPR025192 | Succ_DH/fum_Rdtase_N | |
| InterPro | IPR012285 | Fum_reductase_C | |
| InterPro | IPR006058 | 2Fe2S_fd_BS | |
| InterPro | IPR017900 | 4Fe4S_Fe_S_CS | |
| InterPro | IPR009051 | Helical_ferredxn | |
| InterPro | IPR004489 | Succ_DH/fum_Rdtase_Fe-S | |
| Gene Ontology(BP) | GO:0006099 | tricarboxylic acid cycle | |
| Gene Ontology(MF) | GO:0009055 | electron carrier activity | |
| Gene Ontology(MF) | GO:0051537 | 2 iron, 2 sulfur cluster binding | |
| Gene Ontology(BP) | GO:0055114 | oxidation-reduction process | |
| Gene Ontology(MF) | GO:0051536 | iron-sulfur cluster binding | |
| Gene Ontology(MF) | GO:0016491 | oxidoreductase activity |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|---|---|---|
| Gene08305 | BMgn009206 | chr14 | 8586351 | 8587235 | Bm_scaf38 | 3431129 | 3432013 | - |
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS202024 | DPSCF300053 | 828753 | 829628 | - |
| H. melpomene | HMEL008047 | HE671861 | 43359 | 45974 | - |
| M. sexta | Msex004201-RA | scaffold00060 | 976019 | 976888 | - |
| P. xylostella | Px007409.1 | scaffold_261 | 183574 | 184497 | + |