KAIKObase gene description page [BMgn016556/Gene10923]
Outline
| Official gene ID | BMgn016556 |
|---|---|
| Local gene ID | Gene10923 |
| Chromosome | chr19 |
| Start (Chr.) | 1246881 |
| End (Chr.) | 1268029 |
| Scaffold | Bm_scaf100 |
| Start (Scaf.) | 1246881 |
| End (Scaf.) | 1268029 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| AK386595 | full-length cDNA | Yes |
Representative sequence
Nucleotide
GAGAGAGGTAGTCAACGCTGCTTTGCGAGGACGCCGTGTCAAACTACTTACACATCACAATGTCCATTGTTCGGTGTAATATGTTAAAATTTACATCAATTAAATTGACACGACATTATTCAAAATTCGAGTGTAAAGAGGGCAGACAAGTAAATTCGGCGAAGAAACCTCCCATACTCTACGGAGATGAAGTATCTCCGCCCGTGAGATTTGTGATGATGACAGCAGCGCACCTCAACATTCAGTTGGATTTCCACCCAATTGATCTCTTTAAGTCTGAACACAAAATGGACGCTTTTAATCAGATTAATCCACTTCAAAAGGTGCCAGTGTTGAAAGTTGATAAAGATGTGATCTGTGACAGTCACGCTATTGCAATGTACCTTTGTGAAACTACTAAATCTGAAGATTTGTGTCCAGGAAGTGCTTTGGCCAGGGCAAAAATAAATCAAATGCTTTTCTACAATGCGACAACTTTATTTCCAATTGACAGTTTCATACTTTCTGAATATTTTTGTGGAAAAATGCCATCTGGAGTTAAAGTTGATGAATGGTTTAATTCTCTGCATTACCTAAATACAGCTCTGTCGGTTTCTCCATGGCTCGCTGGAGATCAGATGAGGATTTGCGACTTTTGCTGTGCTTCCACCATTAGTTCCATGGAGACGGTCGTTAATGGAATCAAGAAATTTGTTTACTTGAAGAGGTGGATGGATGAATTGGAAAAACTACCTTGTTTTGAAATCAACAGACGTGGCTTAGAGCGATTGAAATATTTTATGAGTCTTTACAAGCCAAACTAAATGAACCATTTTATTATTCAAATGAGTAGATGATTAAATTATTGGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ORF
ATGTCCATTGTTCGGTGTAATATGTTAAAATTTACATCAATTAAATTGACACGACATTATTCAAAATTCGAGTGTAAAGAGGGCAGACAAGTAAATTCGGCGAAGAAACCTCCCATACTCTACGGAGATGAAGTATCTCCGCCCGTGAGATTTGTGATGATGACAGCAGCGCACCTCAACATTCAGTTGGATTTCCACCCAATTGATCTCTTTAAGTCTGAACACAAAATGGACGCTTTTAATCAGATTAATCCACTTCAAAAGGTGCCAGTGTTGAAAGTTGATAAAGATGTGATCTGTGACAGTCACGCTATTGCAATGTACCTTTGTGAAACTACTAAATCTGAAGATTTGTGTCCAGGAAGTGCTTTGGCCAGGGCAAAAATAAATCAAATGCTTTTCTACAATGCGACAACTTTATTTCCAATTGACAGTTTCATACTTTCTGAATATTTTTGTGGAAAAATGCCATCTGGAGTTAAAGTTGATGAATGGTTTAATTCTCTGCATTACCTAAATACAGCTCTGTCGGTTTCTCCATGGCTCGCTGGAGATCAGATGAGGATTTGCGACTTTTGCTGTGCTTCCACCATTAGTTCCATGGAGACGGTCGTTAATGGAATCAAGAAATTTGTTTACTTGAAGAGGTGGATGGATGAATTGGAAAAACTACCTTGTTTTGAAATCAACAGACGTGGCTTAGAGCGATTGAAATATTTTATGAGTCTTTACAAGCCAAACTAA
Protein
MSIVRCNMLKFTSIKLTRHYSKFECKEGRQVNSAKKPPILYGDEVSPPVRFVMMTAAHLNIQLDFHPIDLFKSEHKMDAFNQINPLQKVPVLKVDKDVICDSHAIAMYLCETTKSEDLCPGSALARAKINQMLFYNATTLFPIDSFILSEYFCGKMPSGVKVDEWFNSLHYLNTALSVSPWLAGDQMRICDFCCASTISSMETVVNGIKKFVYLKRWMDELEKLPCFEINRRGLERLKYFMSLYKPN*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13409.1 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF13410.1 | Glutathione S-transferase, C-terminal domain | |
| Pfam/Hmmer3 | PF02798.15 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF13417.1 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF00043.20 | Glutathione S-transferase, C-terminal domain | |
| BLASTP/NCBI-nr | ABY66602 | glutathione S-transferase 14, partial [Bombyx mori] | 1e-144 |
| InterPro | IPR010987 | Glutathione-S-Trfase_C-like | |
| InterPro | IPR017933 | Glutathione_S_Trfase/Cl_chnl_C | |
| InterPro | IPR004045 | Glutathione_S-Trfase_N | |
| InterPro | IPR012336 | Thioredoxin-like_fold | |
| Gene Ontology(MF) | GO:0005515 | protein binding |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| P. xylostella | Px014816.1 | scaffold_66 | 869398 | 871220 | + |