KAIKObase gene description page [BMgn017368/Gene15845]
Outline
| Official gene ID | BMgn017368 |
|---|---|
| Local gene ID | Gene15845 |
| Chromosome | unknown |
| Start (Chr.) | ND |
| End (Chr.) | ND |
| Scaffold | Bm_scaf146 |
| Start (Scaf.) | 375338 |
| End (Scaf.) | 377368 |
| Direction | + |
Member sequences
| ID | Type | Representative |
|---|---|---|
| NM_001046665.1 | publicly available mRNA | No |
| AK386161 | full-length cDNA | Yes |
Representative sequence
Nucleotide
GACTTCTTACGTGTGTACACTAGTACACGCACACATTTTTTTTTTAATTGTTTTTATTTGTTTTTGACTCTAACATAATTGGTAAAGTTGTTGTTATTAAATTTGAACTAATTGATCTTAGTTACCCATTTGTAAATTCCACTGCATAATTCAGTCTGTAACCCTTGTAACTAATTATTATTACAAATGTCTTCCTTAAAATTATACCATTTCCCCGTGAGCGGGCCTTCTAGAGGAGCACTACTCGCAGCTAGAGCCATAGGCATTCCAATACAAATTGAAATAGTAAATCTGTTTAAAAAAGAACAACTGCAAGAAAGTTTCTTAAAACTTAACCCACAGCATTGTGTACCTACACTGGACGATAATAACTTTGTTCTATGGGAAAGTAGAGCTATCGCATGCTATTTAGCCGATAAATATGGAAAAGACGATCAATGGTATCCAAAGGATTTACAAAAACGCGCAGTCGTAAACCAGAGATTATACTTTGACAGCGCATCTTTGTATGTTAAAATAAGAGCAATTTGTTTCCCAATATTATTCCTGGGTGAAACGGAGATTAAACAAAGTTTAAAGGATGACCTTAACTCTACATTGAGTTTCCTCAATCAGTTTTTAGAGAAGACCAAGTGGGTGGCAGCTGATCACCCCACAATTGCAGACACATCTATTTATGCATCTATGTCTAGTATTTTGGCTGTTGGATGGGATATATCAAGTTTTCCAAACATTCAAAGATGGATTAAAGATTGCTTATTATTGCCTGGAGCACAAGAAAATGAAGATGGTGCTCGAACATTTGGAGATGCCGTAAAAAAGAATATCAAACAATAAAATGCTCATAAAAACATTATTTAGTATATATTTCTCTTATATTTATTTCAATATATTATTCTATAAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ORF
ATGTCTTCCTTAAAATTATACCATTTCCCCGTGAGCGGGCCTTCTAGAGGAGCACTACTCGCAGCTAGAGCCATAGGCATTCCAATACAAATTGAAATAGTAAATCTGTTTAAAAAAGAACAACTGCAAGAAAGTTTCTTAAAACTTAACCCACAGCATTGTGTACCTACACTGGACGATAATAACTTTGTTCTATGGGAAAGTAGAGCTATCGCATGCTATTTAGCCGATAAATATGGAAAAGACGATCAATGGTATCCAAAGGATTTACAAAAACGCGCAGTCGTAAACCAGAGATTATACTTTGACAGCGCATCTTTGTATGTTAAAATAAGAGCAATTTGTTTCCCAATATTATTCCTGGGTGAAACGGAGATTAAACAAAGTTTAAAGGATGACCTTAACTCTACATTGAGTTTCCTCAATCAGTTTTTAGAGAAGACCAAGTGGGTGGCAGCTGATCACCCCACAATTGCAGACACATCTATTTATGCATCTATGTCTAGTATTTTGGCTGTTGGATGGGATATATCAAGTTTTCCAAACATTCAAAGATGGATTAAAGATTGCTTATTATTGCCTGGAGCACAAGAAAATGAAGATGGTGCTCGAACATTTGGAGATGCCGTAAAAAAGAATATCAAACAATAA
Protein
MSSLKLYHFPVSGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDDNNFVLWESRAIACYLADKYGKDDQWYPKDLQKRAVVNQRLYFDSASLYVKIRAICFPILFLGETEIKQSLKDDLNSTLSFLNQFLEKTKWVAADHPTIADTSIYASMSSILAVGWDISSFPNIQRWIKDCLLLPGAQENEDGARTFGDAVKKNIKQ*
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
|---|---|---|---|
| Pfam/Hmmer3 | PF13409.1 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF13410.1 | Glutathione S-transferase, C-terminal domain | |
| Pfam/Hmmer3 | PF02798.15 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF13417.1 | Glutathione S-transferase, N-terminal domain | |
| Pfam/Hmmer3 | PF00043.20 | Glutathione S-transferase, C-terminal domain | |
| BLASTP/NCBI-nr | BAJ33499 | unclassified glutathione S-transferase [Bombyx mori] | 1e-159 |
| InterPro | IPR004046 | GST_C | |
| InterPro | IPR010987 | Glutathione-S-Trfase_C-like | |
| InterPro | IPR017933 | Glutathione_S_Trfase/Cl_chnl_C | |
| InterPro | IPR004045 | Glutathione_S-Trfase_N | |
| InterPro | IPR012336 | Thioredoxin-like_fold | |
| Gene Ontology(MF) | GO:0005515 | protein binding |
Expression data (EST count)
Paralog/Ortholog genes
Paralogous genes
| Gene ID | Official gene ID | Chr. | Chr. start | Chr. end | Scaffold ID | Start | End | Direction |
|---|
Orthologous genes
| Species | Gene ID | Scaffold ID | Start | End | Direction |
|---|---|---|---|---|---|
| D. plexippus | DPOGS210477 | DPSCF300062 | 500580 | 501357 | + |
| M. sexta | Msex009776-RA | scaffold00228 | 94385 | 104359 | - |
| P. xylostella | Px010993.1 | scaffold_408 | 261710 | 262672 | - |